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dcouvin / CRISPRCasFinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
https://crisprcas.i2bc.paris-saclay.fr
GNU General Public License v3.0
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Recent Singularity container is not recognized by Singularity versions <2.6.1 #40

Open jcv888 opened 2 years ago

jcv888 commented 2 years ago

I downloaded the singularity image from https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CrisprCasFinder.simg recently and it is not recognized by Singularity versions 2.6.1 and 2.4.*. An older image I downloaded last year still works just fine, so I assume this has to do with how it was built (perhaps a Singularity version >=3.0). command: singularity exec -B $PWD CrisprCasFinder.simg perl /usr/local/CRISPRCasFinder/CRISPRCasFinder.pl -so /usr/local/CRISPRCasFinder/sel392v2.so -cf /usr/local/CRISPRCasFinder/CasFinder-2.0.3 -drpt /usr/local/CRISPRCasFinder/supplementary_files/repeatDirection.tsv -rpts /usr/local/CRISPRCasFinder/supplementary_files/Repeat_List.csv -def G -html -cas -out crisprcasfinder -in fasta.fasta

error: ERROR : Unknown image format/type: CrisprCasFinder.simg ABORT : Retval = 255

Just thought I'd pass this along, as I'll probably be fine just using the older image. Thanks, Cris

dcouvin commented 2 years ago

Dear Cris, Thank you for your message. We will try to solve this issue. Best regards, David

Le mar. 6 sept. 2022, 20:15, jcv888 @.***> a écrit :

I downloaded the singularity image from https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CrisprCasFinder.simg recently and it is not recognized by Singularity versions 2.6.1 and 2.4.*. An older image I downloaded last year still works just fine, so I assume this has to do with how it was built (perhaps a Singularity version >=3.0). command: singularity exec -B $PWD CrisprCasFinder.simg perl /usr/local/CRISPRCasFinder/CRISPRCasFinder.pl -so /usr/local/CRISPRCasFinder/sel392v2.so -cf /usr/local/CRISPRCasFinder/CasFinder-2.0.3 -drpt /usr/local/CRISPRCasFinder/supplementary_files/repeatDirection.tsv -rpts /usr/local/CRISPRCasFinder/supplementary_files/Repeat_List.csv -def G -html -cas -out crisprcasfinder -in fasta.fasta

error: ERROR : Unknown image format/type: /home/cris/miniconda3/envs/annotate2/installs/CrisprCasFinder/CrisprCasFinder.simg ABORT : Retval = 255

Just thought I'd pass this along, as I'll probably be fine just using the older image. Thanks, Cris

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