The result of CRISPR-Cas_summary.tsv don't have Cas Types/Subtypes

dcouvin / CRISPRCasFinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences

https://crisprcas.i2bc.paris-saclay.fr

GNU General Public License v3.0

80 stars 28 forks source link

The result of CRISPR-Cas_summary.tsv don't have Cas Types/Subtypes #48

Open WoCer2019 opened 1 year ago

WoCer2019 commented 1 year ago

Hi, all

I used this nice tool to identify CRISPR-Cas systems for my assembled MAGs. However, the result of the output file (CRISPR-Cas_summary.tsv) doesn't have Cas and Cas Types/Subtypes. Why? Where is it wrong?

command: perl CRISPRCasFinder.pl -in MAG1.fa -out output -log -so CRISPRCasFinder/sel392v2.so -cas -keep -gscf -meta CRISPR-Cas_summary.txt

Best wishes!

Thanks!

Jay

dcouvin commented 1 year ago

Hi Jay, Thank you for your message. I don't know why you didn't find Cas types/subtypes in your sequences. Please try another tool like CRISPRCasMeta (https://crisprcas.i2bc.paris-saclay.fr/CrisprCasMeta/Index). Hoping that it will help! Best wishes, David