Open WoCer2019 opened 1 year ago
Hi Jay, Thank you for your message. I don't know why you didn't find Cas types/subtypes in your sequences. Please try another tool like CRISPRCasMeta (https://crisprcas.i2bc.paris-saclay.fr/CrisprCasMeta/Index). Hoping that it will help! Best wishes, David
Hi, all
I used this nice tool to identify CRISPR-Cas systems for my assembled MAGs. However, the result of the output file (CRISPR-Cas_summary.tsv) doesn't have Cas and Cas Types/Subtypes. Why? Where is it wrong?
command:
perl CRISPRCasFinder.pl -in MAG1.fa -out output -log -so CRISPRCasFinder/sel392v2.so -cas -keep -gscf -meta
CRISPR-Cas_summary.txtBest wishes!
Thanks!
Jay