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dcouvin / CRISPRCasFinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
https://crisprcas.i2bc.paris-saclay.fr
GNU General Public License v3.0
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No CRISPR/CAS detection on fasta files with more than 100 contigs #49

Open shreya1singh728 opened 1 year ago

shreya1singh728 commented 1 year ago

Hello,

I installed CRISPRCasFinder using conda. I am running the script on draft genomes. The script is running fine with the fasta files containing less than 100 contigs but is detecting no CRISPR arrays or cas genes with the files having more than 100 contigs. Majority of my genomes are having more than 100 contigs, how to run the script on these files?

I would be highly obliged if you could help me through this.

dcouvin commented 1 year ago

Hi @shreya1singh728 , Thank you for your message. Did you try other tools to see if some CRISPRs or Cas are detected in you sequences? Please try another tool like CRISPRCasMeta (https://crisprcas.i2bc.paris-saclay.fr/CrisprCasMeta/Index). Hoping that it will help! Best wishes, @dcouvin