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dcouvin / simpiTB

A pipeline for the analysis of whole genome sequences belonging to Mycobacterium tuberculosis complex
GNU General Public License v3.0
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Analyses failing on Galaxy #1

Open RuanSpies21 opened 3 months ago

RuanSpies21 commented 3 months ago

I have tried to submit 6 paired illumina sequence fastq files through the Galaxy portal but all the analyses fail. All modules fail with the same error message:

python3: can't open file '/home/galaxyua2/galaxy/tools/simpitbSpoTyping/SpoTyping-v3.0-commandLine/SpoTyping.py': [Errno 2] No such file or directory open : No such file or directory at /home/galaxyua2/galaxy/tools/simpitb/simpiTB2.pl line 548.

dcouvin commented 3 months ago

Dear @RuanSpies21 , Thank you for your message. We will look at this issue and try to solve it soon. I will let you know