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deLaatLab
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pipe4C
4C-seq processing pipeline
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pipe4C question for paired-end sequencing
#38
ljiaxin2022
opened
1 month ago
0
secondcutter not found
#37
ljiaxin2022
opened
2 months ago
2
Genome not found
#36
xmliu01
closed
3 months ago
1
Error when converting wig to bigwig file
#35
ziyin96
closed
6 months ago
2
Proximity effect normalization
#34
DakeshiKitano
closed
6 months ago
1
a problem when runing Compute normalized 4C score per fragment
#33
lwf20
closed
9 months ago
5
Could Pipe4C run with other genome such as zebrafish or others?
#32
lwf20
closed
9 months ago
2
"0 No unique fragment ends found for capture length"
#31
Zeyu618
closed
10 months ago
0
Sequencing depth normalization
#30
DakeshiKitano
closed
9 months ago
5
Problem running example "Cannot open file '/home/archive/LR_JGoncalve/tmp_DataLake/tools/tools/pipe4c/outF/RDS/NA' No such file or directory
#29
Jungal10
closed
9 months ago
2
Error in getPeakCPeaks(resPeakC, chr = resPeakC$vpChr, min.gapwidth = min.gapwidth) : unused argument (chr = resPeakC$vpChr)
#28
yermek2030
closed
12 months ago
4
Error in data.frame
#27
rrueda89
closed
1 year ago
2
Run.4Cpipeline -> getFragMap -> getUniqueFragends -> system
#26
yanqishi1
closed
1 year ago
1
(ERR): "/igenomes/Mus_musculus/UCSC/mm9" does not exist or is not a Bowtie 2 index
#25
ulloaa
closed
1 year ago
2
pipe4C for paired-end sequencing
#24
ccmeth
closed
2 years ago
1
No unique fragment ends for capture length
#23
WanyingX
closed
2 years ago
1
Digest Question
#22
wiw4002
closed
2 years ago
1
No unique fragment ends found for capture length
#21
KSchtz
closed
2 years ago
3
No unique fragment ends
#20
laillern
closed
2 years ago
4
Error Creating local 4C Plot
#19
laillern
closed
2 years ago
1
pipe4C problems: makeBAM not working
#18
salvzzz
closed
3 years ago
4
peakC can not be installed
#17
shanwai1234
closed
3 years ago
0
no mapped cis read
#16
Nais29
closed
3 years ago
1
Error in validObject(.Object)
#15
rrueda89
closed
1 year ago
14
question about paired end sequencing data for 4C
#14
kendyhoangucsc
closed
4 years ago
4
peakC "Error in if (data[1, 1] > vp.pos)"
#13
YuhanTian
closed
4 years ago
5
Processing fastq files without primer
#12
ChanakaCooray
closed
4 years ago
16
Questions about alignment and VPinfo.txt
#11
kalavattam
closed
4 years ago
1
NA as result
#10
eandresleon
closed
4 years ago
6
Error in gzfile(file, mode) : cannot open the connection
#9
celinasjose
closed
4 years ago
4
1st RE motif not found in reads
#8
mvheetve
closed
4 years ago
7
read count normalization and smoothing
#7
fiwong
closed
4 years ago
1
doPeakC does not exist
#6
tamerbio
closed
4 years ago
4
Qestions about run time and Double-end sequencing
#5
Wenbin-Wang
closed
4 years ago
1
error after 'frag map for genome' report generation step
#4
amywebb
closed
4 years ago
1
Suggestions on long-range interaction
#3
smartgamer
closed
4 years ago
1
If I only used one enzyme, can I still use this pipeline ?
#2
smartgamer
closed
4 years ago
4
how to run pipe4C.R
#1
liu-555
closed
4 years ago
15