issues
search
dePamphilis
/
PlantTribes
PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
GNU General Public License v3.0
32
stars
18
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
PhylogenomicsAnalysis (legacy pipeline) failed at RAxML
#29
maggiesudo
opened
2 months ago
0
Installing Plant Tribes
#28
FranciscoMenendez
opened
1 year ago
2
add installation methods
#27
Huiting120
closed
1 year ago
0
add PlantTribes2 publication
#26
Huiting120
closed
1 year ago
0
No error reported when the number of input sequence is more than the default in PhylogenyBuilder
#25
Huiting120
opened
1 year ago
0
KaKsAnalysis pipeline crashes when dealing with proteins that have many alanines, threonines, glycines or cysteines
#24
shelkmike
opened
1 year ago
1
Add QC tools
#23
Huiting120
opened
1 year ago
0
Add additional classification methods
#22
Huiting120
opened
2 years ago
0
kaksAnalysis pipeline error!
#21
sunnycqcn
closed
3 years ago
1
Help on running test data
#20
sanbio
closed
3 years ago
1
Set AssemblyPostProcessor min_coverage range to be 0.0 to 1.0
#19
gregvonkuster
closed
6 years ago
0
Add enhanced ks_distribution.R script
#18
gregvonkuster
closed
7 years ago
0
Set exit code to 1 when terminating on error
#17
gregvonkuster
closed
7 years ago
1
Remove unused config_dir option
#16
gregvonkuster
closed
7 years ago
0
Remove unused config_dir variable from GeneFamilyIntegrator
#15
gregvonkuster
closed
7 years ago
1
Add initial version of kaks_analysis_barplot.R
#14
gregvonkuster
closed
7 years ago
0
Fix for handling default PAML codeml file
#13
gregvonkuster
closed
7 years ago
0
Eliminate the use of plantTribes.config
#12
gregvonkuster
closed
7 years ago
0
Use inline text if --codeml_ctl_file is not used
#11
gregvonkuster
closed
7 years ago
0
Better fix for handling default singleCopy.config
#10
gregvonkuster
closed
7 years ago
0
Fix for using default singleCopy.config in GeneFamilyClassifier
#9
gregvonkuster
closed
7 years ago
1
Change --single_copy_custom from flag to string in GeneFamilyClassifier
#8
gregvonkuster
closed
7 years ago
0
Various pipeline fixes
#7
gregvonkuster
closed
7 years ago
7
Allow optionally passing in path to config files
#6
gregvonkuster
closed
7 years ago
3
Eliminate --scaffold_dir parameter
#5
gregvonkuster
closed
7 years ago
0
Fix perl declaration
#4
gregvonkuster
closed
7 years ago
1
Remove the recently added --no_config_override option
#3
gregvonkuster
closed
7 years ago
2
Allow for not overriding the environment
#2
gregvonkuster
closed
7 years ago
1
Add optional --scaffold_dir parameter
#1
gregvonkuster
closed
7 years ago
3