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deepomicslab / PhageScope

PhageScope: a well-annotated bacteriophage database with automatic analysis and visualization
MIT License
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lifestyle prediction fails #3

Closed dejsha closed 1 month ago

dejsha commented 1 month ago

Hi, I am not able to run lifestyle prediciton analysis. The task always fails (tasks 7384, 7385, 7456). The log always says:

/var/spool/slurmd/job1417095/slurm_script: line 19: ${$2}: bad substitution /apps/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/pythran/tables.py:4520: FutureWarning: In the future np.bool will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /apps/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/pythran/tables.py:4553: FutureWarning: In the future np.bytes will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) Traceback (most recent call last): File "/data2/platform/phage_database/analysis_script/lifestyle/Graphage_lifestyle.py", line 18, in import Biodata File "/data2/platform/phage_database/analysis_script/lifestyle/Biodata.py", line 7, in import torch ModuleNotFoundError: No module named 'torch' module load complete running build_ext task complete

Could you please check what is the problem? Thank you very much!! Dagmar

ys2022 commented 1 month ago

Dear Dagmar,

Thank you for reporting the issues. We have identified a compatibility issue with PyTorch following a recent upgrade. Our team is working to resolve this and we expect to deploy a fix within the next two days.

We apologize for the inconvenience and appreciate your patience.

Best regards, PhageScope Team

ys2022 commented 1 month ago

Dear Dagmar,

The issue has been resolved. If you encounter any further problems, please do not hesitate to contact us.

Best regards, PhageScope Team