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deeptime-ml
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deeptime
Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
https://deeptime-ml.github.io/
GNU Lesser General Public License v3.0
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[ci] fix python 3.8
#244
clonker
closed
2 years ago
1
better error handling for trajectories dataset
#243
clonker
closed
2 years ago
1
proper exception handling in trajectory-generating openmp block
#242
clonker
closed
2 years ago
3
Better error handling for custom_sde
#241
thempel
closed
2 years ago
0
Fix preprocess data call in SINDy
#240
clonker
closed
2 years ago
1
Fix shape of empty count models
#239
MaaikeG
closed
2 years ago
1
TrajectoriesDataset misleading error message
#238
thempel
closed
2 years ago
0
plot fluxes
#237
clonker
closed
2 years ago
1
Network plots
#236
clonker
closed
2 years ago
2
Units
#235
clonker
opened
2 years ago
0
plot energy surfaces
#234
clonker
closed
2 years ago
1
CI: Update manifest to include npz data files, don't use editable install for nox make_docs
#233
clonker
closed
2 years ago
1
update manifest to include cmakelists
#232
clonker
closed
2 years ago
0
Fix in setup
#231
clonker
closed
2 years ago
0
update project metadata
#230
clonker
closed
2 years ago
0
[datasets] correct 1D triple well docs
#229
thempel
closed
2 years ago
1
Update versioneer and run cython from CMake
#228
clonker
closed
2 years ago
1
Versioneer update
#227
clonker
closed
2 years ago
0
pyproject.toml: use dynamic version
#226
clonker
closed
2 years ago
1
Build fails suddenly
#224
cap-jmk
closed
2 years ago
3
Small doc fixes and update testing dependencies
#223
clonker
closed
2 years ago
1
Disable TF-32 tensor cores for VAMPNET training
#222
yuxuanzhuang
closed
2 years ago
3
typos in _koopman.py
#221
KirillShmilovich
closed
2 years ago
2
Different VAMPNET results from CPU/GPU training
#220
yuxuanzhuang
closed
2 years ago
11
Fix bug in statdist caching for msms
#219
clonker
closed
2 years ago
1
Sort Markov matrix
#218
cap-jmk
opened
2 years ago
21
Tram experiments
#217
MaaikeG
closed
2 years ago
1
use Agg backend in plotting tests
#216
clonker
closed
2 years ago
1
Use CMake as primary build system via scikit-build
#215
clonker
closed
2 years ago
3
Tram experiments
#214
MaaikeG
closed
2 years ago
1
Docs update
#213
clonker
closed
2 years ago
1
Installation runs into CUDA problem
#212
cap-jmk
closed
2 years ago
13
add device option for TAE class
#211
philipyoung9561
closed
2 years ago
2
new tram notebook version
#210
MaaikeG
closed
2 years ago
1
fix the big bad bug
#209
MaaikeG
closed
2 years ago
1
Minor changes
#208
clonker
closed
2 years ago
1
Mbar initialization for tram
#207
MaaikeG
closed
2 years ago
1
Fix the calculation of the PMF.
#206
MaaikeG
closed
2 years ago
1
Update validation loss on TAE
#205
clarktemple03
closed
2 years ago
2
Fix numpy deprecated warning
#204
MaaikeG
closed
2 years ago
2
Chapman-Kolmogorov test for Koopman models
#203
clonker
opened
2 years ago
0
New Chapman-Kolmogorov test implementation
#202
clonker
closed
2 years ago
1
Make sample weights normalized
#201
MaaikeG
closed
2 years ago
2
Implied timescales plot
#200
clonker
closed
2 years ago
1
Log space sample weights
#199
MaaikeG
closed
2 years ago
1
Finish progress callbacks
#198
clonker
closed
2 years ago
1
Update readme and use pyroject.toml in setup
#197
clonker
closed
2 years ago
1
Hotfix tramdataset
#196
MaaikeG
closed
2 years ago
1
Cluster progress
#195
clonker
closed
2 years ago
1
Trajectory fragments: split on negative state indices
#194
MaaikeG
closed
2 years ago
1
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