dfsp-spirit fsbrain issues

dfsp-spirit / fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

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issues

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Error in rgl::open3d() : OpenGL is not available in this build

#55 xasapakos opened 2 months ago
1
Add title to plots

#54 GerardYu opened 10 months ago
1
Saving annotation to file

#53 iamjoostjanssen opened 1 year ago
2
Error: rgl.viewpoint is depreciated

#52 cooperr11 closed 1 year ago
5
save output as grob objects

#51 GerardYu opened 1 year ago
1
Tight layout with 9 view inflated

#50 mattsodoma closed 1 year ago
8
9 view inflated surface

#49 mattsodoma closed 1 year ago
1
Change rgl.* calls to *3d calls.

#48 dmurdoch closed 1 year ago
1
MacOS support of fsbrain

#47 dfsp-spirit closed 1 year ago
2
No figure output

#46 rb643 closed 1 year ago
20
No picture out after running "vis.subject.annot" code in Ubuntu 20.04

#45 Clancy-wu closed 1 year ago
6
Support plotting on log scale

#44 dfsp-spirit closed 1 year ago
1
better documentation structure

#43 dfsp-spirit closed 1 year ago
0
Backup nitestdata on public, scientific repo

#42 dfsp-spirit opened 1 year ago
1
Export directly

#41 mattsodoma closed 1 year ago
5
visualising group difference maps

#40 MaLiUHH opened 2 years ago
8
Render with R-shiny

#39 dipterix opened 2 years ago
2
display p-values overlay

#38 knutj opened 2 years ago
1
New fsbrain installation on M1 Mac does not show colorbar

#37 utooley opened 2 years ago
3
datastructure returned by label.to.annot does not have 'fs.annot' class

#36 dfsp-spirit closed 2 years ago
1
Inflated views intertwined

#35 signebray closed 2 years ago
3
Error in setwd(dir) : cannot change working directory - while creating GIF movie using fsbrain locally

#34 XinQi7788 closed 2 years ago
1
Issues to create a GIF file using fsbrain docker image

#33 XinQi7788 closed 2 years ago
1
Is it possible to visualize the Surface and Volume at the same time?

#32 wjddyd66 closed 2 years ago
2
coloredmesh from Brain surface trimesh and values vector

#31 rcruces closed 2 years ago
7
Snapshot at an angle?

#30 utooley closed 3 years ago
3
I have a question about lh_region_value_list & rh_region_value_list

#29 wjddyd66 closed 3 years ago
5
annot.outline as a background

#28 AndrewLawrence opened 3 years ago
3
Problem with basic visualization in tutorial

#27 gpdm94 closed 3 years ago
4
Getting error that the subject file is missing even though the subject file is present in the subjects directory.

#26 vaidehithakre21 closed 3 years ago
14
highlighting directly adjacent vertices fails with error

#25 dfsp-spirit closed 3 years ago
1
Visualising volume data with surface boundaries

#24 sidchop opened 3 years ago
3
Update coloredmesh.R

#23 zhenglukai closed 3 years ago
2
Create fsbrain API cheat sheet

#22 dfsp-spirit closed 2 years ago
1
Fix white stripes in custom background of images exported with vis.export.from.coloredmeshes

#21 dfsp-spirit closed 3 years ago
1
makecmap_options 'range' return error and Additional view

#20 rcruces closed 3 years ago
6
Min/Max setting in plotting

#19 rb643 closed 3 years ago
17
Problem with tutorial

#18 shima-jalalian closed 3 years ago
3
Match the background vertices and results vertices

#17 icupsy closed 3 years ago
6
Neuroconductor CI

#16 dfsp-spirit closed 3 years ago
2
Make it easy to get additional brain atlases

#15 dfsp-spirit closed 2 years ago
3
Multi-layer transparency

#14 dfsp-spirit opened 4 years ago
0
Add custom lobe annotation to be able to use vis.region.values.on.subject with lobes

#13 dfsp-spirit closed 3 years ago
1
Support writing subject metadata to separate MD file when saving cached data for groups

#12 dfsp-spirit closed 3 years ago
2
fsaverage.path() should prefer FreeSurfer version over local download

#11 dfsp-spirit closed 4 years ago
1
High-level interface to export publication quality figure with colorbar

#10 dfsp-spirit closed 4 years ago
1
Support passing data for both hemispheres in a single vector to vis functions

#9 dfsp-spirit closed 4 years ago
1
Support limiting the plotted data range

#8 dfsp-spirit closed 4 years ago
1
Views other than t4 garbled for inflated and vis.x.on.subject

#7 utooley closed 4 years ago
5
Symmetrical colorbars are drawn incorrectly

#6 dfsp-spirit closed 4 years ago
2