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dhimmel / fratjuice

Uncovering the microbes of fraternity basements
Creative Commons Zero v1.0 Universal
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Upload uBiome raw fatsq data #6

Closed dhimmel closed 6 years ago

dhimmel commented 6 years ago

Downloaded sequence data from the uBiome Explorer, which provided the following documentation:

Download sequence data: Download a FASTQ formatted file of your raw data. For ideas on how to use your raw data, read Richard Sprague's article on analyzing your data with Python.

See https://github.com/dhimmel/fratjuice/issues/5 for uBiome Explorer info. The kit/tube to ssr id mapping is not yet known (although can be deduced at download time). We'll see if uBiome can provide us with a mapping information.

Track .zip files with Git LFS.

Use GitLab LFS, which offers sufficient free tier LFS storage for this project, rather than GitHub LFS as the LFS server. Created a mirror of the repository on GitLab for this purpose at https://gitlab.com/dhimmel/fratjuice