The #fratjuice microbiome

For study background, see the inaugural tweet.

Scripts

generate-details.py creates markdown documents with details for each sample.

Environment

This repository uses conda to manage its environment as specified in environment.yml. Install the environment with:

conda env create --file=environment.yml

Then use source activate fratjuice and source deactivate to activate or deactivate the environment. On windows, use activate fratjuice and deactivate instead.