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dib-lab / dib_rotation

Metagenomics DIB-lab rotation project
https://dib-lab.github.io/dib_rotation/
BSD 3-Clause "New" or "Revised" License
2 stars 8 forks source link

update lca gather to just gather #28

Open taylorreiter opened 3 years ago

taylorreiter commented 3 years ago

Now that gather is lightening fast, we should replace the sourmash lca gather module with sourmash gather, and update to the new databases.

https://github.com/dib-lab/dib_rotation/blob/master/doc/07_taxonomic_discovery_with_sourmash.md

ctb commented 3 years ago

well, it's not quite lightning fast just yet. And the new databases are quite large :). But yes, eventually!