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dib-lab / dib_rotation

Metagenomics DIB-lab rotation project
https://dib-lab.github.io/dib_rotation/
BSD 3-Clause "New" or "Revised" License
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srun session does not work #31

Open clmattson-zz opened 3 years ago

clmattson-zz commented 3 years ago

In 10_annotating_amino_acid_sequences, prior to using kofamscan

srun -p bmh -J KO -t 48:00:00 --mem=8gb -c 6 --pty bash

gives error "srun: Job step's --cpus-per-task value exceeds that of job (6 > 1). Job step may never run. srun: error: Unable to create step for job 28296912: More processors requested than permitted"

works with -c 1 (but I'm not sure what later consequence that might have)

ctb commented 3 years ago

try adding -n 6

On Fri, Dec 04, 2020 at 08:19:39AM -0800, clmattson wrote:

srun -p bmh -J KO -t 48:00:00 --mem=8gb -c 6 --pty bash

gives error "srun: Job step's --cpus-per-task value exceeds that of job (6 > 1). Job step may never run. srun: error: Unable to create step for job 28296912: More processors requested than permitted"

works with -c 1 (but I'm not sure what later consequence that might have)

-- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/dib-lab/dib_rotation/issues/31 -- C. Titus Brown, ctbrown@ucdavis.edu