dib-lab / genome-grist

map Illumina metagenomes to genomes!
https://dib-lab.github.io/genome-grist/
Other
37 stars 6 forks source link

Bump snakemake from 7.20.0 to 7.24.0 #269

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps snakemake from 7.20.0 to 7.23.1.

Release notes

Sourced from snakemake's releases.

v7.23.1

7.23.1 (2023-02-18)

Bug Fixes

v7.23.0

7.23.0 (2023-02-18)

Features

  • changed report layout to display menu always left of the results. For fullscreen, one can still hide the menu, which leads to automatic growth of the results (#2116) (d771b1b)
  • Publish docker images for amd64 & arm64 (#2105) (4c898f5)

Bug Fixes

  • use text/markdown for long_description_content_type (#2112) (0241075)

Performance Improvements

  • Improve execution speed of cleanup_workdir (in dag) (#2103) (1fbc5f5)

v7.22.0

7.22.0 (2023-02-12)

Features

Bug Fixes

  • assume shared filesystem by default when running with --flux (#2075) (4bec2fd)
  • properly handle NA values for paramspaces (#2098) (6b6a880)

v7.21.0

7.21.0 (2023-01-30)

Features

  • ability to encode paramspaces into a single wildcard, via the newly introduced single_wildcard argument of Paramspace. (#2069) (728ab3c)
  • allow input, output, and params to be used in functions passed to report mark arguments (#2081) (93ff8b6)

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.23.1 (2023-02-18)

Bug Fixes

7.23.0 (2023-02-18)

Features

  • changed report layout to display menu always left of the results. For fullscreen, one can still hide the menu, which leads to automatic growth of the results (#2116) (d771b1b)
  • Publish docker images for amd64 & arm64 (#2105) (4c898f5)

Bug Fixes

  • use text/markdown for long_description_content_type (#2112) (0241075)

Performance Improvements

  • Improve execution speed of cleanup_workdir (in dag) (#2103) (1fbc5f5)

7.22.0 (2023-02-12)

Features

Bug Fixes

  • assume shared filesystem by default when running with --flux (#2075) (4bec2fd)
  • properly handle NA values for paramspaces (#2098) (6b6a880)

7.21.0 (2023-01-30)

Features

  • ability to encode paramspaces into a single wildcard, via the newly introduced single_wildcard argument of Paramspace. (#2069) (728ab3c)
  • allow input, output, and params to be used in functions passed to report mark arguments (#2081) (93ff8b6)

Bug Fixes

  • more robust encoding of params in persistent metadata storage. This way, pandas parameters do not lead to spurious rerun triggers. (#2080) (106a4c3)

... (truncated)

Commits
  • a110ae0 chore(main): release 7.23.1 (#2119)
  • 53248c1 chore(deps): Bump marocchino/sticky-pull-request-comment from 2.3.1 to 2.5.0 ...
  • 4e63483 chore(deps): Bump khan/pull-request-workflow-cancel from 1.0.0 to 1.0.1 (#2111)
  • 0b1fe31 fix: batch collect jobs for scancel (#2114)
  • b12d803 chore(main): release 7.23.0 (#2117)
  • bca013a feat: Add support for tokens in the XRootD interface (#2076)
  • d771b1b feat: changed report layout to display menu always left of the results. For f...
  • ba804ea chore: fix CI deployment on windows (#2118)
  • 4c898f5 feat: Publish docker images for amd64 & arm64 (#2105)
  • 0241075 fix: use text/markdown for long_description_content_type (#2112)
  • Additional commits viewable in compare view


Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
ctb commented 1 year ago

@dependabot rebase

dependabot[bot] commented 1 year ago

A newer version of snakemake exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.