dib-lab / genome-grist

map Illumina metagenomes to genomes!
https://dib-lab.github.io/genome-grist/
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Bump snakemake from 7.25.0 to 7.28.3 #287

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps snakemake from 7.25.0 to 7.28.3.

Release notes

Sourced from snakemake's releases.

v7.28.3

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

v7.28.2

7.28.2 (2023-06-13)

Bug Fixes

  • fix pandas import handling in metadata persistence (27f7b40)

v7.28.1

7.28.1 (2023-06-11)

Bug Fixes

  • Bump yte from >=1.0,<2.0 to >=1.5.1,<2.0 (#2275) (8c0b34f)
  • remove superfluous dependency (aad61a0)

v7.28.0

7.28.0 (2023-06-11)

Features

v7.27.0

7.27.0 (2023-06-07)

Features

  • Allow the environment variable SNAKEMAKE_CONDA_PREFIX to be present without --use-conda (#2263) (e4eba8d)

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

7.28.2 (2023-06-13)

Bug Fixes

  • fix pandas import handling in metadata persistence (27f7b40)

7.28.1 (2023-06-11)

Bug Fixes

  • Bump yte from >=1.0,<2.0 to >=1.5.1,<2.0 (#2275) (8c0b34f)
  • remove superfluous dependency (aad61a0)

7.28.0 (2023-06-11)

Features

7.27.0 (2023-06-07)

Features

  • Allow the environment variable SNAKEMAKE_CONDA_PREFIX to be present without --use-conda (#2263) (e4eba8d)

Bug Fixes

  • adapt linting rule to Python 3.11 (a3a5c58)

... (truncated)

Commits
  • 04b6dab chore(main): release 7.28.3 (#2301)
  • eb6e2e1 perf: avoid superflous mtime checks when the same file is referred to by mult...
  • e08a771 fix: Detect pandas availability to select serializer (#2300)
  • 908dbf1 docs: update docs for azbatch and dockerhub ref (#2298)
  • bca7959 chore: temporarily allow zenodo test to fail
  • d5d6630 chore(main): release 7.28.2 (#2297)
  • 27f7b40 fix: fix pandas import handling in metadata persistence
  • c767a85 Update README.md (#2295)
  • 578ecc2 chore(main): release 7.28.1 (#2294)
  • 8c0b34f fix: Bump yte from >=1.0,<2.0 to >=1.5.1,<2.0 (#2275)
  • Additional commits viewable in compare view


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dependabot[bot] commented 1 year ago

Superseded by #288.