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map Illumina metagenomes to genomes!
https://dib-lab.github.io/genome-grist/
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Bump lxml from 4.9.3 to 5.0.0 #306

Closed dependabot[bot] closed 10 months ago

dependabot[bot] commented 11 months ago

Bumps lxml from 4.9.3 to 5.0.0.

Changelog

Sourced from lxml's changelog.

5.0.0 (2023-12-29)

Features added

  • Character escaping in C14N2 serialisation now uses a single pass over the text instead of searching for each unescaped character separately.

  • Early support for Python 3.13a2 was added.

Bugs fixed

  • LP#1976304: The Element.addnext() method previously inserted the new element before existing tail text. The tail text of both sibling elements now stays on the respective elements.

  • LP#1980767, GH#379: TreeBuilder.close() could fail with a TypeError after parsing incorrect input. Original patch by Enrico Minack.

  • Element.itertext(with_tail=False) returned the tail text of comments and processing instructions, despite the explicit option.

  • GH#370: A crash with recent libxml2 2.11.x versions was resolved. Patch by Michael Schlenker.

  • A compile problem with recent libxml2 2.12.x versions was resolved.

  • The internal exception handling in C callbacks was improved for Cython 3.0.

  • The exception declarations of xmlInputReadCallback, xmlInputCloseCallback, xmlOutputWriteCallback and xmlOutputCloseCallback in tree.pxd were corrected to prevent running Python code or calling into the C-API with a live exception set.

  • GH#385: The long deprecated unittest.m̀akeSuite() function is no longer used. Patch by Miro Hrončok.

  • LP#1522052: A file-system specific test is now optional and should no longer fail on systems that don't support it.

  • GH#392: Some tests were adapted for libxml2 2.13. Patch by Nick Wellnhofer.

  • Contains all fixes from lxml 4.9.4.

Other changes

... (truncated)

Commits
  • 73fa115 Prepare release of lxml 5.0.0.
  • 6256584 Update changelog.
  • b38cebf Disable external entity resolution (XXE) by default (GH-391)
  • 2de6ecf tests: Set no_network=False in HTTP tests (GH-392)
  • 5024820 Minor code cleanup.
  • 9f58aa7 Do not let "Element.itertext()"" return tail text of PIs and comments if the ...
  • badcb49 Update changelog.
  • e82b1f5 CI: Build the coverage job with STATIC_DEPS=true to make it independent of th...
  • 8324137 Fix test in Py2.7.
  • ac82838 Fix the work around for a test failure in Python 3.11.
  • Additional commits viewable in compare view


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dependabot[bot] commented 10 months ago

Superseded by #307.