search

dib-lab / genome-grist

map Illumina metagenomes to genomes!
https://dib-lab.github.io/genome-grist/
Other
37 stars 6 forks source link

Bump lxml from 4.9.3 to 5.0.1 #307

Closed dependabot[bot] closed 10 months ago

dependabot[bot] commented 10 months ago

Bumps lxml from 4.9.3 to 5.0.1.

Changelog

Sourced from lxml's changelog.

5.0.1 (2024-01-05)

Bugs fixed

  • LP#2046208: Parsing non-BMP Python Unicode strings could fail on macOS.

  • LP#2044225: When incrementally parsing broken HTML, reporting start events on missing structural tags failed and could lead to subsequent exceptions.

  • LP#2045435: Some (not all) issues with stricter C compilers were resolved.

  • The binary wheels in the 5.0.0 release did not validate cleanly (but installed ok).

.. _latest_release:

5.0.0 (2023-12-29)

Features added

  • Character escaping in C14N2 serialisation now uses a single pass over the text instead of searching for each unescaped character separately.

  • Early support for Python 3.13a2 was added.

Bugs fixed

  • LP#1976304: The Element.addnext() method previously inserted the new element before existing tail text. The tail text of both sibling elements now stays on the respective elements.

  • LP#1980767, GH#379: TreeBuilder.close() could fail with a TypeError after parsing incorrect input. Original patch by Enrico Minack.

  • Element.itertext(with_tail=False) returned the tail text of comments and processing instructions, despite the explicit option.

  • GH#370: A crash with recent libxml2 2.11.x versions was resolved. Patch by Michael Schlenker.

  • A compile problem with recent libxml2 2.12.x versions was resolved.

  • The internal exception handling in C callbacks was improved for Cython 3.0.

  • The exception declarations of xmlInputReadCallback, xmlInputCloseCallback,

... (truncated)

Commits
  • eb5cd98 Prepare release of 5.0.1.
  • c1e9e6f Fix test in narrow Py2 unicode builds.
  • be24db7 Py2 fixes.
  • 22eff9f Update changelog.
  • d83c37d Make Python UCS-4 string parsing work more reliably on macOS.
  • 7f07559 Update changelog.
  • 663041a Add casts to silence C compiler warnings with older libxml2 versions that don...
  • 0d30cec Update changelog.
  • 28b416f Intern the HTML tag names in reported SAX start events since they may not alw...
  • 576b8e9 Remove dead code and avoid reading an uninitialised variable.
  • Additional commits viewable in compare view


Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
dependabot[bot] commented 10 months ago

Superseded by #308.