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dictyBase / Migration

Entrypoint for dictybase overhaul project
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RNA genes not in new Gene Pages and GO #109

Open pfey03 opened 6 years ago

pfey03 commented 6 years ago

@cybersiddhu @wildlifehexagon

RNA genes are not yet in the new database imported as genes? Does it have to do with GO to RNACentral IDs? when will those be done? https://testdb.dictybase.org/gene/DDB_G0294515/goa

This is gene dutA which is perfectly annotated in P2GO and maps to URS0000484B67_352472

dictybase RNA Central mapping.txt

pfey03 commented 6 years ago

In the attached mapping file, the URS0000484B67 is the ID, however, since in RNACentral they do strain specific, the full ID used in P2GO is URS0000484B67_352472 including AX4 taxon ID, which is in the file in column 4.

So please attach to each URS ID __352472 Thanks!

pfey03 commented 6 years ago

An example of RNA annotations, even EXP URS00003BBFC7_352472 = DDB_G0294415

when will we have RNA annotations?