Entry point for overhaul project

Conventions

• The project should link to mostly work in progress documentation, finished one is also acceptable.
• The link could be internal markdown or external.
• Create subproject links if neccessary, however choose a name close to a one mentioned in overhaul document.
• Create an issue in any of the dictyBase github repositories for tracking the progress. Link it out from from its documentation project here.

Projects

• Database versioning
• Unit testing
• Data export from oracle
  • Gene models/annotations
  • Literature/annotations
  • Stock/Phenotype
• Data Import in Postgresql
  • Gene models/annotations
  • GPAD
  • Ontologies
  • Literature
  • Stock/Phenotype
  • Support for data with non-ascii characters in postgresql.
• Importing data from analysis.
• Backend data access
  • Specification
  • Microservices API and specifications
  • Software implementation
    • User
    • Content
• Frontend Web UI
  • dictyBase front page.
  • Gene page
  • Literature and ontology.
  • Stock center and ordering.
  • Blast.
  • Search.
  • Curation tools mockup
• Batch processing
• Misc
• Third party tools
• Deploy

Data dependencies and current migration status

Colors

• Green: Completed
• Red: Incomplete
• Gradient: Partially complete

Oracle database refresh

The instuctions for database refresh is here

Archived(Retired, only here for information)

• Server setup and deployment
• Hosting