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dictyBase / Migration

Entrypoint for dictybase overhaul project
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Smart filtering GO for Display on Gene Summary Page #111

Closed pfey03 closed 5 years ago

pfey03 commented 6 years ago

This is the follow up from recent conversations and replaces https://github.com/dictyBase/Migration/issues/107, which has some older ideas that now evolved.

Display of GO annotations on the Gene Summary Page is filtered for each GO Aspect (MF, BP and CC). So for each aspect, the following rules apply:

1) If EXP annotations are present -> Display NO Manual or IEA annotations

2) If no EXP are available BUT Manual -> Display Manual but NO IEAs

3) If no EXP and no Manual are available -> Display IEAs

4) For all evidence categories, EXP, Other Manual, and IEAs, display only 5 most recent annotations

5) Display: GO term + extension| With | Evidence

Here are some real annotations for gene svkA and how they should be listed on Gene Summary Page

Molecular Function:

protein serine/threonine kinase activity (IDA) protein kinase activity _hasinput sevA (IDA protein binding with cepL (IPI)

Biological Process:

protein phosphorylation _hasinput sevA (IDA) regulation of actin cytoskeleton organization (IMP) positive regulation of cell division (IMP)

Cellular Component:

cytoplasm _existsduring mitotic interphase (IDA) centromere _existsduring mitotic cytokinesis (IDA)

All extensions and also the 'with' in italic. All Dicty genes in extensions like here cepL and sevA, should be linked to those genes.

erichartline commented 5 years ago

This has been finished and is live on testdb