THIS ISSUE HAS BEEN MOVED TO MODWARE-LOADER
(I have not found a way to delete issues or move to another project)
Running modware-import dictyplasmid2chado -c configuration.yaml throws the following error:
DBIx::Class::ResultSet::count(): DBI Exception: DBD::Oracle::db prepare_cached failed: ORA-00942: table or view does not exist (DBD ERROR: error possibly near <*> indicator at char 23 in 'SELECT COUNT( * ) FROM <*>stockcollection me WHERE ( name = :p1 ) ') [for Statement "SELECT COUNT( * ) FROM stockcollection me WHERE ( name = ? ) "] at /Library/Perl/5.16/Modware/Role/Stock/Import/DataStash.pm line 370
DBIx::Class::Carp::__ANON__(): A DBIx::Class::Storage::TxnScopeGuard went out of scope without explicit commit or error. Rolling back. at /System/Library/Perl/Extras/5.16/DBIx/Class/Storage/TxnScopeGuard.pm line 132
Pre-diagnosis
It seems that the stockcollection table that Modware/Role/Stock/Import/DataStash.pm should create, it is not working. This is the subroutine involved in the incident:
sub create_stockcollection {
my ( $self, $name, $type_id ) = @_;
my $stockcollection_rs
= $self->schema->resultset('Stock::Stockcollection')->create(
{ type_id => $type_id,
name => $name,
uniquename => $self->utils->nextval( 'stockcollection', 'DSC' )
}
);
if ($stockcollection_rs) {
return $stockcollection_rs->stockcollection_id;
}
return;
}
THIS ISSUE HAS BEEN MOVED TO MODWARE-LOADER (I have not found a way to delete issues or move to another project)
Running
modware-import dictyplasmid2chado -c configuration.yaml
throws the following error:Pre-diagnosis It seems that the
stockcollection
table thatModware/Role/Stock/Import/DataStash.pm
should create, it is not working. This is the subroutine involved in the incident: