pfey03
commented
10 years ago Zfin shows just one term on summary and without Evidence code, but says in a link how many annotations there are and on GO page with evidence code. They have manual annotations on summary if available, how they choose, maybe alphabetical I don't know. http://zfin.org/action/marker/view/ZDB-GENE-090313-229 http://zfin.org/action/marker/view/ZDB-GENE-041014-276
Flybase doesn't seem to show IEAs on their gene page. They distinguish between Experimental Evidence and Predictions and Assertions. http://flybase.org/reports/FBgn0004389.html http://flybase.org/reports/FBgn0264695.html
erichartline
When there are a lot of GO annotations, especially for conserved genes, there are too many annotations bunched together and in no sense making order. Often there are IEAs for exactly the same terms that we have already as IDA or such. http://dictybase.org/gene/p2xA SGD separates them, and even finer as they also mark 'high throughput', which we don't have. They show only manual annotations on the gene summary, and all annotations including IEAs on the GO page/tab http://www.yeastgenome.org/cgi-bin/locus.fpl?locus=S000000011 http://www.yeastgenome.org/cgi-bin/locus.fpl?locus=S000000011/go
We don't have such deep annotations in Dicty, so we wouldn't have any annotations for some if we don't show IEAs on Summary page. But I like their one annotation per line and bullet point organization. Much easier to see the annotations. I can probably come up with a mock-up at some point, but comments from others appreciated.