dictyBase / migration-data

Data files required for migration
MIT License
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Add files via upload #68

Closed pfey03 closed 1 year ago

pfey03 commented 1 year ago

Skip this section if it's not ontology(obo) files

:atom: :electron: :atom: :electron: :basecampy: :basecamp:

Pull request for editing ontology(obo) files

That's all. :neckbeard: :neckbeard: :neckbeard: :trollface: :trollface:

github-actions[bot] commented 1 year ago

:x: :x: Ontology errors :x: :x:

File: dicty_phenotypes.obo

:boom:Violations:boom:

  • duplicate definition
  • misused obsolete label
  • duplicate label

Full report

Level Rule Name Subject Property Value
ERROR duplicate_definition DDPHENO:0000726 IAO:0000115 Increase in extent, amount, or degree of protein tyrosine kinase activity.
ERROR duplicate_definition DDPHENO:0000746 IAO:0000115 Increase in extent, amount, or degree of protein tyrosine kinase activity.
ERROR duplicate_definition DDPHENO:0000724 IAO:0000115 Complete absence of protein tyrosine kinase activity.
ERROR duplicate_definition DDPHENO:0000747 IAO:0000115 Complete absence of protein tyrosine kinase activity.
ERROR misused_obsolete_label DDPHENO:0000457 rdfs:label obsolete aberrant actin phosphorylation
ERROR duplicate_label DDPHENO:0000726 rdfs:label increased protein tyrosine kinase activity
ERROR duplicate_label DDPHENO:0000746 rdfs:label increased protein tyrosine kinase activity
ERROR duplicate_label DDPHENO:0000725 rdfs:label decreased protein tyrosine kinase activity
ERROR duplicate_label DDPHENO:0000745 rdfs:label decreased protein tyrosine kinase activity
ERROR duplicate_label DDPHENO:0000724 rdfs:label abolished protein tyrosine kinase activity
ERROR duplicate_label DDPHENO:0000747 rdfs:label abolished protein tyrosine kinase activity
WARN missing_definition DDPHENO:0000766 IAO:0000115
WARN missing_definition IAO:0000115 IAO:0000115
WARN missing_definition oboInOwl:hasAlternativeId IAO:0000115
WARN missing_definition oboInOwl:hasBroadSynonym IAO:0000115
WARN missing_definition oboInOwl:hasDbXref IAO:0000115
WARN missing_definition oboInOwl:hasExactSynonym IAO:0000115
WARN missing_definition oboInOwl:hasNarrowSynonym IAO:0000115
WARN missing_definition oboInOwl:hasOBOFormatVersion IAO:0000115
WARN missing_definition oboInOwl:hasOBONamespace IAO:0000115
WARN missing_definition oboInOwl:hasRelatedSynonym IAO:0000115
INFO missing_superclass DDPHENO:0010000 rdfs:subClassOf