Struggling to generate sct_named_clusters.RData file

diegoalexespi / espinozada-tonsil-paper-2021

Notebooks for analysis of Espinoza DA et al. 2021

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Struggling to generate sct_named_clusters.RData file #2

Open ChrisSteel-bio opened 2 months ago

ChrisSteel-bio commented 2 months ago

I trying to generate the sct_named_clusters.RData file to use as a reference map to project some B cell lymphoma data on to. Although PrepSCTIntegration() is broken with more recent seurat versions related to issue #9112, and downgrading Seurat is proving difficult due to out of date dependencies. If you happen to have this file anywhere it would be very helpful if you could send it to me.

diegoalexespi commented 2 months ago

hi @ChrisSteel-bio ! Yes absolutely. Could you share a good email that I can reach you at?

ChrisSteel-bio commented 2 months ago

Hi @diegoalexespi, many thanks for your quick reply and your kind offer to send across these data. My email is cjs236@cam.ac.uk

ChrisSteel-bio commented 2 months ago

Hi @diegoalexespi, I wondered whether you had gotten chance to have a look for this file? Sorry to chase this up, our work is somewhat time sensitive.

Many thanks, Chris