espinozada-tonsil-paper-2021

R Markdown notebooks for the analysis of Espinoza DA et al. 2021

Preprocessing gene sets: sct_seurat_X_geneset_to_gmt.html

Step 0 (Pre-processing): sct_seurat_0_raw_filtering.html

Step 1 (Integration and clustering): sct_seurat_1_seuratv3.html

Step 2 (pySCENIC results): sct_seurat_2_pyscenic.html

Step 3 (GCPC analysis): sct_seurat_3_GCPC.html

Step 4 (pseudotemporal analysis): sct_seurat_4_slingshot.html

Step 5 (figures): sct_seurat_5_figures.html

Step 6 (figure S8): sct_seurat_6_external_comparison.html