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dieterich-lab / Baltica

Baltica: integrated differential junction usage
https://dieterich-lab.github.io/Baltica/
MIT License
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Dealing with unstranded RNA libraries #17

Closed tbrittoborges closed 2 years ago

tbrittoborges commented 3 years ago

JunctionSeq outputs coordinates without the strand information when RNA libraries are unstranded.

We can resolve the issue by changing the IRanges::findOverlaps' parameter ignore.strand from FALSE to TRUE. As a consequence, introns from opposite strands would be grouped.

tbrittoborges commented 2 years ago

closed with release 1.1.2