dieterich-lab / scimodom

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Import tables (setup) #102

Closed eboileau closed 2 weeks ago

eboileau commented 1 month ago

Aims/objectives.

The nomenclature for RNA types (table rna_type), modifications (table modomics), technologies (table method), and taxa (tables taxonomy and ncbi_taxa) is fixed. There is also an annotation and assembly table. These tables are "upserted" on startup. They are essential for the database setup.

A clear and concise description of todo items.

For the first release, we may need to extend ncbi_taxa and available assemblies (annotation and assembly tables). See also #97 re rna_type table.