How exactly should we handle start, end coordinates? Now we implicitly assume that start=thick_start, and end=thick_end, and only use start and ende.g. in displaying Search and Comparison results, etc. For bedtools-like operations, only BED6 fields are considered for calculating intersections, etc. But generally, start and end may be used to report context.
A clear and concise description of todo items.
We need to think carefully how this eventually integrates with "RNA processing data".
Aims/objectives.
How exactly should we handle
start,endcoordinates? Now we implicitly assume thatstart=thick_start, andend=thick_end, and only usestartandende.g. in displaying Search and Comparison results, etc. For bedtools-like operations, only BED6 fields are considered for calculating intersections, etc. But generally,startandendmay be used to report context.A clear and concise description of todo items.
We need to think carefully how this eventually integrates with "RNA processing data".