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dieterich-lab / scimodom

Sci- ModoM: A quantitative database of transcriptome-wide high-throughput RNA modification sites
https://dieterich-lab.github.io/scimodom/
GNU Affero General Public License v3.0
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Seach view "computed" filters #59

Closed eboileau closed 7 months ago

eboileau commented 9 months ago

Aims/objectives.

We need filters for "sites confirmed by N techniques" and "sites found in N dataset/projects". I don't know how to implement these, we could do that in the FE (computed property) or in the BE, or else if we have table columns for techniques and dataset, we could add table filters e.g. MultiSelect, but see #58 and #60. These filters may be dependent on the organism.

A clear and concise description of todo items.

eboileau commented 7 months ago

Adding "aggregate filters" on technology would require grouping on modification site (chrom, start, strand), and would entail also concatenating score, coverage, and frequency. Since the display is bedRMod-oriented, it is "normal" that sites (rows) are repeated for a given site across different studies, where any of coverage, frequency, score, or technology may differ.