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dieterich-lab / scimodom

Sci- ModoM: A quantitative database of transcriptome-wide high-throughput RNA modification sites
https://dieterich-lab.github.io/scimodom/
GNU Affero General Public License v3.0
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Data serialization #75

Closed eboileau closed 4 months ago

eboileau commented 8 months ago

Aims/objectives.

For now this is pretty straightforward, using _asdict() in a list comprehension, but in terms of performance I have no clue.

The problem is more general, e.g. in operations.py how to efficiently convert bedtools to records?

A clear and concise description of todo items.

Query serialization and bedtools conversion.

eboileau commented 6 months ago

To do with #80

eboileau commented 4 months ago

For operations/compare, use pydantic. This is moved to a different issue.