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digitalcytometry
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cytospace
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
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Adding assay parameter to generate_cytospace_from_scRNA_seurat_object
#57
simoncmo
closed
1 year ago
1
Quick Gotchas and current solutions
#56
simoncmo
closed
1 year ago
4
-op parameter generate error 'cell_type_assignments_by_spot.csv does not exist'
#55
ChangliangWang
closed
1 year ago
2
cannot open file 'get_cellfracs_seuratv3.R
#54
gakabani
closed
1 year ago
5
Seurat_weights.txt does not exist
#53
williamsdrake
closed
1 year ago
2
Problem when cell_type_labels are numeric
#52
MostBeef
closed
1 year ago
4
Update for revision
#51
cbsteen
closed
2 years ago
0
RE: single cell reference
#50
vravik
closed
1 year ago
2
Update README.md
#49
erinlbrown
closed
2 years ago
0
Update README.md
#48
erinlbrown
closed
2 years ago
0
Update README
#47
erinlbrown
closed
2 years ago
0
Update generating from Seurat inputs section
#46
miladrafiee
closed
2 years ago
0
Update generating Seurat inputs section
#45
miladrafiee
closed
2 years ago
0
Updating generate CytoSPACE inputs from Seurat objects
#44
miladrafiee
closed
2 years ago
0
small update on ReadMe file
#43
miladrafiee
closed
2 years ago
0
Update data preparation files
#42
miladrafiee
closed
2 years ago
0
Update input file preparation
#41
miladrafiee
closed
2 years ago
0
Update CytoSPACE file preparation
#40
miladrafiee
closed
2 years ago
0
Updating plotting parameters
#39
miladrafiee
closed
2 years ago
0
update plotting section
#38
miladrafiee
closed
2 years ago
0
Update cytospace.py
#37
erinlbrown
closed
2 years ago
0
Update post_processing.py
#36
erinlbrown
closed
2 years ago
0
Update logging
#35
erinlbrown
closed
2 years ago
0
Update output code
#34
erinlbrown
closed
2 years ago
0
add a feature to plot non-Visium dimensions
#33
miladrafiee
closed
2 years ago
0
update plotting parameters
#32
miladrafiee
closed
2 years ago
0
Update README.md
#31
erinlbrown
closed
2 years ago
0
Update README.md
#30
erinlbrown
closed
2 years ago
0
add scripts to generate cytospace outputs
#29
miladrafiee
closed
2 years ago
0
Update README.md
#28
erinlbrown
closed
2 years ago
0
Update README.md
#27
erinlbrown
closed
2 years ago
0
Update argument_parser.py
#26
erinlbrown
closed
2 years ago
0
Update README.md
#25
erinlbrown
closed
2 years ago
0
Update solvers
#24
erinlbrown
closed
2 years ago
0
Update README.md
#23
erinlbrown
closed
2 years ago
0
Update README.md
#22
erinlbrown
closed
2 years ago
0
Update README.md
#21
erinlbrown
closed
2 years ago
0
Update README.md
#20
erinlbrown
closed
2 years ago
0
Update README.md
#19
erinlbrown
closed
2 years ago
0
Update README.md
#18
erinlbrown
closed
2 years ago
0
Update README.md
#17
erinlbrown
closed
2 years ago
0
Update README.md
#16
erinlbrown
closed
2 years ago
0
Update linear_assignment_solvers.py
#15
erinlbrown
closed
2 years ago
0
Update README.md
#14
erinlbrown
closed
2 years ago
0
Create environment_withlapjv.yml
#13
erinlbrown
closed
2 years ago
0
Update get_cellfracs_seuratv3.R
#12
erinlbrown
closed
2 years ago
0
Update README.md
#11
erinlbrown
closed
2 years ago
0
Add gdown instructions
#10
erinlbrown
closed
2 years ago
0
Include gdown in environment.yml
#9
erinlbrown
closed
2 years ago
0
updating plotting parameters
#8
miladrafiee
closed
2 years ago
0
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