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digitalcytometry
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cytospace
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
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Question About Jittered Coordinates in plot_results_bulk_ST_jitter Function
#108
aboutfanfan
opened
1 day ago
0
Is cytospace compatible with Visium HD?
#107
niklasbinder
opened
1 week ago
0
Error in split.default(x = cells.vector, f = ceiling(x = seq_along(along.with = cells.vector)/ncells)) :
#106
NicolaasVanRenne
opened
3 weeks ago
1
Question about the "estimate_cell_number_RNA_reads" function
#105
DDDoGGie
opened
4 months ago
0
Stuck at correlation step and Broken Process
#104
yrsong001
opened
4 months ago
1
Cannot find more nearest neighbours than there are points
#103
Svvord
opened
4 months ago
0
Illegal hardware instruction cytospace -sp -ctp -stp -cp -o -op
#102
ankushs0128
opened
5 months ago
2
Running Cytospace on Harmony integrated object
#101
arijita88
opened
6 months ago
0
Purpose of downsampling
#100
d-paliwal
closed
5 months ago
4
Dependencies issue
#99
Rafael-Silva-Oliveira
closed
5 months ago
1
Running cytospace with multiple slides
#98
sharonlee7980
closed
5 months ago
1
Cell Fraction estimation for Legacy ST with Smart-seq single-cell
#97
sahil-sahni
closed
7 months ago
12
Is there a way to plot a specific celltype alone?
#96
NicolaasVanRenne
closed
10 months ago
1
Error running cytoSPACE. glmGamPoi
#95
alfonsosaera
closed
12 months ago
4
Integration error
#94
Ocean-Lyu
closed
1 year ago
3
Guide post cytoSPACE
#93
xiweiwu
closed
1 year ago
2
Any plans on updating working Python version?
#92
andrew-weisman
closed
1 year ago
2
can i get the simulated dataset?
#91
jennyxxxxxx
closed
1 year ago
3
Have Docker images or singularity images?
#90
caiquanyou
closed
1 year ago
1
get_cellfracs_seuratv3 does not work on sparse matrix
#89
smeiersab
closed
7 months ago
6
ValueError: Cell type TYPE_NA in the ST dataset is not available in the scRNA-seq dataset
#88
suerle
closed
1 year ago
4
glmGamPoi Error
#87
hannhat1998
closed
12 months ago
1
Add glmGamPoi_1.2.0 to environment.yml
#86
WubingZhang
closed
12 months ago
0
error, but I do not know why
#85
Yulintian
closed
1 year ago
2
Update get_cellfracs_seuratv3.R
#84
WubingZhang
closed
1 year ago
0
Working with Stereo-seq data
#83
tvegawaichman
closed
1 year ago
2
Some cell types are not inferred
#82
fuerzhou
closed
1 year ago
4
scRNA-seq reference
#81
ChenJin2020
closed
1 year ago
2
color label for cellTypes
#80
abulislam
closed
1 year ago
1
Error: Cannot find more nearest neighbours than there are points
#79
kwangdol
closed
1 year ago
1
TypeError: '<' not supported between instances of 'str' and 'int' in plot.py
#78
suerle
closed
1 year ago
2
run_cytospace Issue after successful install
#77
dmiyagi
closed
1 year ago
8
OSError: Could not find 'spatial/tissue_positions_list.csv'
#76
gebdu
closed
1 year ago
1
comparing different dlides/sections
#75
gebdu
closed
1 year ago
1
possibility of sparse matrix support?
#74
mcaponegro
closed
1 year ago
3
Create releases for each version
#73
leej3
closed
1 year ago
3
What's the reason of "Killed"?
#72
e-tomato
closed
1 year ago
3
Error during get_cellfracs_seuratv3.R - colSums(predictions.assay) : 'x' must be an array of at least two dimensions
#71
ssrin2
closed
1 year ago
2
Error arised in plot.py--TypeError: unsupported operand type(s) for -: 'str' and 'str'
#70
hiiiyilingzhang
closed
1 year ago
3
Issues about parameter 'ctfep'
#69
wangzlgithub
closed
1 year ago
3
Error: package or namespace load failed for ‘Seurat’ in dyn.load(file, DLLpath = DLLpath, ...):
#68
zt6597
closed
1 year ago
5
Running Error
#67
DHGK
closed
1 year ago
4
Segmentation fault error during linear assignment
#66
mcaponegro
closed
1 year ago
2
How to specify a 'genome' parameter?
#65
psenin-sanofi
closed
1 year ago
1
can't install, plz help me
#64
wanglin1992
closed
1 year ago
1
subprocess.CalledProcessError:
#63
trantunhi99
closed
1 year ago
0
Simulated datasets
#62
jincanke
closed
1 year ago
3
Unexpected Terminated when Solving linear assignment problem
#61
QianhuiXu
closed
1 year ago
1
Denoising before running cytoSPACE
#60
rajeha
closed
1 year ago
1
Purpose of single cell mode
#59
reillyeo
closed
1 year ago
1
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