We want to use ecotyper in our scRNA-Seq dataset. But I was confused with the differences of Tutorial 2 with Tutorial 5. Which analysis pipeline should I follow to analyze cell type-specific transcriptional states and co-association patterns in our scRNA-Seq dataset?
I'm really at a loss as to how to proceed, and any guidance would be much appreciated!
Tutorial 2 allows you to label your single cells to the cell states that we already defined in carcinoma or lymphoma. Tutorial 5 allows you to discover de-novo cell states and ecotypes from your scRNA-seq data. So, my sense is that you want to try Tutorial 5.
BALuca
commented
2 years ago
Dear EcoTyper team,
We want to use ecotyper in our scRNA-Seq dataset. But I was confused with the differences of Tutorial 2 with Tutorial 5. Which analysis pipeline should I follow to analyze cell type-specific transcriptional states and co-association patterns in our scRNA-Seq dataset? I'm really at a loss as to how to proceed, and any guidance would be much appreciated!
Sincerely, Qianhui Xu