• STA426-project
  • Title
  • Methods to be compared
  • Data
  • Final report

STA426-project

Title

Comparison of statistical methods for the detection of differentially methylated regions.

Methods to be compared

• bsseq
• CGmapTools
• defiant
• DMRcaller
• dmrseq
• MethPipe
• methylKit

Data

• negative control data - two groups, each of three samples, from normal human dendritic cells (data in GEO)
• simulated data - simulated DMRs added to negative control by simDMRS function from dmrseq package (docs)

Final report

Project report

NOTE: The project is best viewed when the whole repository is downloaded, as there are several softlinks and links. Or, it can be viewed prom the link provided in the Final report section