dmis-lab biobert issues

dmis-lab / biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

http://doi.org/10.1093/bioinformatics/btz682

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Which BioBERT version is best?

#196 Asaad-Pak opened 3 months ago
1
Hope the files can be numbered to guide me in the order of reading.

#195 KKKlingyanqiu123 opened 6 months ago
0
vocab.txt内容是啥，如何进行定义。

#194 nibaba007 opened 6 months ago
0
Can the server run BioBERT without a GPU?

#193 Liwanglili opened 1 year ago
1
remove dead link

#192 bsenst opened 1 year ago
0
The link of "this tool" is invalid

#191 happycjksh opened 1 year ago
1
error :replicating biobert exactly with NCbI dataset

#190 ayodejioogunseye opened 1 year ago
1
The Dataset link is invalid

#189 Nick0821 opened 1 year ago
6
Bump tensorflow-gpu from 1.15.2 to 2.12.0

#188 dependabot[bot] opened 1 year ago
0
docker container and example notebook

#187 skr3178 opened 1 year ago
0
How to convert biobert-large-cased-v1.1-squad to onnx

#186 yli223 closed 1 year ago
0
BioBert pre-trained weights and models are out of reach and download

#185 vahab-mspour closed 1 year ago
4
importing biobert_v1.1_pubmed ERROR 404: Not Found to Colab notebook

#184 JaskaranKaurGill opened 1 year ago
2
Bump tensorflow-gpu from 1.15.2 to 2.9.3

#183 dependabot[bot] closed 1 year ago
1
Difference among various pretrained huggingface models

#182 liulizuel closed 2 years ago
0
Split for JNLPBA dataset.

#181 siddharthtumre opened 2 years ago
0
running the relation extraction model

#180 engineernesma93 opened 2 years ago
1
how to do Relation Extraction after using the components(BERN2:http://bern2.korea.ac.kr/) of this prediction entity.

#179 zhangweizhenGitHub closed 2 years ago
3
Bump tensorflow-gpu from 1.15.2 to 2.7.2

#178 dependabot[bot] closed 2 years ago
1
Bump tensorflow-gpu from 1.15.2 to 2.6.4

#177 dependabot[bot] closed 2 years ago
1
How to "re-train" BioBert on a custom medical corpus?

#176 peterphancong opened 2 years ago
0
tokenizer.add_tokens() interfers with downstream NER task

#175 laurens777 opened 2 years ago
0
Why not filter out the [PAD] tokens when computing loss?

#174 zdgithub opened 2 years ago
0
How to use the RE model after training on GAD? I mean How to load the model and start to use it.??

#173 uzair-balouch opened 2 years ago
1
Bump tensorflow-gpu from 1.15.2 to 2.5.3

#172 dependabot[bot] closed 2 years ago
1
Add Dockerfile and fix requirements

#171 leoramme opened 3 years ago
0
Bump tensorflow-gpu from 1.15.2 to 2.5.2

#170 dependabot[bot] closed 2 years ago
1
What are the output files in OUTPUT_DIR after fine-tuning BioBERT for NER?

#169 sbi30 opened 3 years ago
1
Bump tensorflow-gpu from 1.15.2 to 2.5.1

#168 dependabot[bot] closed 3 years ago
1
Registering at BioASQ website

#167 parvathysarat opened 3 years ago
1
For custom RE dataset with entity marked in advanced

#166 KennyNg-19 opened 3 years ago
1
Training on multiple GPUs

#165 vinicius-cleves closed 3 years ago
2
https://bern.korea.ac.kr/ not accessible

#164 luisafuss closed 3 years ago
4
Issues with tokenizers

#163 galsk87 opened 3 years ago
0
RE datasets

#162 luana-be opened 3 years ago
17
Running biobert for pubmed classification on specific text

#161 cartiksharma286 opened 3 years ago
1
Not able to replicate result available in readme

#160 Shailendra77 opened 3 years ago
0
Can BioBERT be used for multilabel classification problem ?

#159 coolcoder001 opened 3 years ago
3
Provide QA BioASQ previous version

#158 abdallah197 opened 3 years ago
1
Bump tensorflow-gpu from 1.15.2 to 2.4.0

#157 dependabot[bot] closed 3 years ago
1
NER: Model pre-trained for BertForTokenClassification task

#156 mshtelma opened 3 years ago
0
Hugginface demo not working | Issue with AutoModel for BioBERT-squad

#155 tanmaylaud opened 3 years ago
0
Questions about the NER dataset

#154 nowhyun opened 3 years ago
0
Questionable training labels in GAD RE dataset

#153 amirkdv opened 3 years ago
2
How do I specify a certain GPU for training when I fine-tuned NER?

#152 Crucialer closed 3 years ago
1
time to train

#151 ShreyasVarun opened 3 years ago
0
how to modify the code and run on GPU?

#150 yangxia605 opened 3 years ago
0
RE finetune using custom dataset, taskname?

#149 ChloeJKim opened 3 years ago
3
chemprot dataset problem with run_re.py script

#148 ghost opened 3 years ago
3
Error when Running Biobert on a variety of biomedical corpora

#147 JinweiZhu opened 3 years ago
1