dmis-lab biobert issues

dmis-lab / biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

http://doi.org/10.1093/bioinformatics/btz682

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for the RE,How to fine-tune for a multi-label classification task,but not binary?

#146 yangxia605 closed 3 years ago
1
Biobert & spacy

#145 joseberlines closed 3 years ago
1
RE Fine-tuning issue

#144 LedaguenelArthur closed 3 years ago
1
Bump tensorflow-gpu from 1.15.2 to 2.3.1

#143 dependabot[bot] closed 3 years ago
1
F1 metrics for NCBI dataset:token level or entity level?

#142 zhiyuanpeng closed 3 years ago
0
Addition of new tokens in vocabulary while pre-training BioBERT

#141 pg427 closed 3 years ago
4
What is in train.csv in the NER datasets?

#140 Santosh-Gupta closed 3 years ago
1
Bump tensorflow-gpu from 1.15.2 to 1.15.4

#139 dependabot[bot] closed 3 years ago
1
cased vs uncased model

#138 mchari closed 3 years ago
1
NER label

#137 kellyquek opened 4 years ago
0
Help required with NER

#136 Orneyfish opened 4 years ago
3
How to load fine-tuned model and to predict?

#135 leeivan opened 4 years ago
2
Benchmark Dataset Preprocessing (QA)

#134 etetteh closed 3 years ago
1
relation extraction task

#133 JehadAldahdooh closed 3 years ago
11
Biobert for ICD/ CPT/ CDT code extraction

#132 NarenInD opened 4 years ago
1
Results on NER datasets

#131 ardakdemir opened 4 years ago
0
Is there a Tensorflow-hub version of the BioBERT model?

#130 ibrahimishag opened 4 years ago
1
./download.sh Unrecognized archive format

#129 MiraWelner opened 4 years ago
0
Another Languages Steps

#128 lbolanos closed 3 years ago
1
Ways to reduce BioBert high CPU usage and prediction time except quantisation

#127 Abl1405 opened 4 years ago
0
.

#126 Cairo-RxLogix closed 4 years ago
0
Cosine Similarity is high when created sentence embeddings for 'asthma' (medical domain) and another with non-medical domain. Why ?

#125 Sumedh1505 opened 4 years ago
0
How much GPU memory needed for the Bert-large model?

#124 brickee closed 3 years ago
3
ImportError: libcublas.so.9.0: cannot open shared object file: No such file or directory

#123 IbtihalFerwana opened 4 years ago
2
Fixed typos

#122 rajeshkp closed 4 years ago
0
I can't download the dataset?

#121 zwd13122889 closed 3 years ago
1
tensorflow-gpu==1.11.0 requirement means <= python3.6

#120 JohnWSteill closed 3 years ago
1
RE gives an error

#119 YuliaInn closed 3 years ago
1
Biobert to Pytorch

#118 rlpatrao closed 3 years ago
2
Running relation extraction on custom text

#117 mathuryash5 opened 4 years ago
2
getting NER labels from BioBert via huggingfaces

#116 mariaBio opened 4 years ago
3
convert pytorch_model.pt [BioBERT-Base v1.1 (+ PubMed 1M)] to pytorch_model.onnx (ONNX)

#115 pumpkinband closed 3 years ago
1
Provide checkpoints to huggingface community

#114 MFreidank closed 3 years ago
8
"ERROR: No matching distribution found for tensorflow-gpu==1.11.0 (from -r requirements.txt (line 1))" while installing requirements.txt

#113 jamshaidsohail5 opened 4 years ago
5
Get embedding vector without randomicity

#112 Zhuph31 closed 3 years ago
2
What was the MLM accuracy when BioBERT was pre-trained?

#111 ibrahimishag opened 4 years ago
1
Running inference on Fine-tuned Biobert model for diseases

#110 geethaRam opened 4 years ago
8
NER detokenize index error

#109 atulkakrana opened 4 years ago
6
PubMed pretrain corpus

#108 ntubertchen closed 4 years ago
1
Issue in running ner_dekonize code

#107 Monikasinghjmi opened 4 years ago
7
Trouble converting relation extraction model to PyTorch

#106 isaacmg closed 4 years ago
1
I can't repeat the result as your paper, on the task of NER?

#105 damionfan closed 3 years ago
1
pandas error in transform_nbest

#104 raulpuric closed 4 years ago
2
How Can I tune learning rate in NER?

#103 miladnouriezade opened 4 years ago
0
Can I test the Chinese data set？

#102 houruihui closed 4 years ago
1
Using pre-trained multi label(2) NER model for predicting in one entity data set.

#101 miladnouriezade closed 4 years ago
0
Creating input/training file in similar format as SQuAD or bioASQ

#100 ozmosi-pharma opened 4 years ago
0
Can biopert just predict the realtion using pertained models and not train as given in Biobert formula

#99 dhwani2410 opened 4 years ago
1
biobert for keras version of huggingface transformers

#98 dmollaaliod closed 4 years ago
1
code for preprocessing

#97 ardakdemir closed 4 years ago
2

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