dmis-lab biobert-pytorch issues

dmis-lab / biobert-pytorch

PyTorch Implementation of BioBERT

http://doi.org/10.1093/bioinformatics/btz682

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Evaluating trained NER model

#45 aclarkse opened 1 month ago
0
transformers version 3.0.0 installaion failing with Rust lang 1.73.0.

#44 junaruga opened 10 months ago
1
KeyError: 'label'

#43 Ahenenerbe opened 11 months ago
1
TypeError: TextInputSequence must be str

#42 Wangrulin-1128 opened 1 year ago
2
Empty dev.tsv files in the GAD dataset after download

#41 MaxwellWibert opened 1 year ago
2
Update run_ner.py to fix AttributeError: Trainer object has no attribute is_world_master

#40 bayegaspard opened 1 year ago
0
How to set the parameter of the biobert

#39 201720502wrl opened 1 year ago
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train_dev.tsv in datasets

#38 jinniulema opened 1 year ago
1
Hellow,auther. The Web link of "download dataset" is out of data. Could you updata it? Thanks!

#37 MrLiuCC opened 1 year ago
2
Generating Embeddings for Unknown Text

#36 shivin9 opened 1 year ago
0
The "convert squad examples" is stuck on new data

#35 ghost opened 1 year ago
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The dataset download doesnt work anymore

#34 ghost opened 1 year ago
1
How to get embedding without deleting duplicates？

#33 WangyuchenCS opened 1 year ago
3
Base models work, but large model doesn't detect any entity

#32 rafsanahmed opened 2 years ago
0
Running NER

#31 SatanuG closed 2 years ago
4
Performing RE on new text

#30 ChrisPaneque opened 2 years ago
6
How to run chemprot relation classification?

#29 arunpatala opened 2 years ago
2
UnboundLocalError: local variable 'initialized_variable_names' referenced before assignment in run_ner.py

#28 gvalchca opened 2 years ago
0
Running Gene-Gene Relation Extraction task [Please I need help urgently!!!!]

#27 clemEssien closed 2 years ago
0
The model cannot be loaded offline.And I found the problem and gave the solution.

#26 aa429879269 opened 2 years ago
0
BC2GM NER result

#25 FreeRotate opened 2 years ago
1
dmis-lab/biobert-base-cased-v1.1 Tokenizer lower cases the input

#24 suamin opened 2 years ago
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Help !

#23 HuangDaohong opened 2 years ago
0
updated for pytorch; multicharacter labels

#22 cbizon opened 2 years ago
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Maintain input file order in embedding output

#21 ben-heil closed 3 years ago
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update to transformers==4.8.1

#20 flowpoint opened 3 years ago
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Running BioBERT on superGLUE tasks?

#19 shi-kejian closed 2 years ago
1
Is there any plan to add processor for QA of type list?

#18 ibrahimishag closed 2 years ago
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How can I use BioBERT for Relation extraction and further finding the effective entities in a sentence?

#17 Meghna-Goyal opened 3 years ago
3
fix NER preprocessing

#16 qute012 closed 3 years ago
0
NER results

#15 ibrahimishag closed 3 years ago
1
can't run QA with albert

#14 abdallah197 opened 3 years ago
0
Error when running evaluation on BioASQ 4-6b datasets

#13 abdallah197 opened 3 years ago
0
Fix wrong answer filename while evaluating RE

#12 ting830812 opened 3 years ago
0
GlueDataset & GlueDataTrainingArguments - working on Colab

#11 LedaguenelArthur opened 3 years ago
4
Converting BioBERT version link

#10 JeffT13 closed 3 years ago
1
Update run_ner.py

#9 abhibisht89 closed 3 years ago
1
Update run_re.py

#8 dengchuanbio closed 3 years ago
1
AttributeError: 'Trainer' object has no attribute 'is_world_master' while fine tuning BioBERT-PyTorch on my custom data set

#7 abhibisht89 closed 3 years ago
5
Broken link for PyTorch conversion steps

#6 mgavish closed 3 years ago
1
Predictions in raw data

#5 GuillermoJaca opened 3 years ago
6
syntax error when running the bash script for cv

#4 mmmddd98 closed 3 years ago
3
How to use the biobert in a multi-label classification task?

#3 yangxia605 closed 3 years ago
1
How run on GPU?

#2 zhaoxiongjun closed 3 years ago
1
Some problems about Fine-tuning Biobert

#1 Peter857 closed 3 years ago
2