issues
search
dnanexus-archive
/
parliament2
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Apache License 2.0
102
stars
39
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Using the parliament2 container with Singularity
#41
sgivan
closed
5 years ago
8
Fix symlink downloads
#40
msimbirsky
closed
5 years ago
3
problem running on CentOS Linux
#39
sgivan
closed
5 years ago
3
Adding testing
#38
slzarate
closed
5 years ago
7
svtyper throws exception on cnvnator vcf
#37
scalavision
opened
5 years ago
1
Parliament2:0.1.9 - svviz not working
#36
MaestSi
closed
5 years ago
10
Final updates for v0.1.9
#35
slzarate
closed
6 years ago
0
V0.1.9
#34
slzarate
closed
6 years ago
0
WDL compatibility
#33
edawson
opened
6 years ago
6
Documentation updates
#32
slzarate
closed
6 years ago
0
Fixed erroring out when gunzipped FASTA already exists on machine
#31
slzarate
closed
6 years ago
0
No space left on device
#30
karlskov
closed
6 years ago
4
Help for running docker
#29
MaestSi
closed
6 years ago
1
Log file additions and cleanup
#28
slzarate
closed
6 years ago
3
Not able to run Parliament2
#27
MaestSi
closed
6 years ago
10
Change TargetCreator input bam parameter for consistency. Add contig-…
#26
slzarate
closed
6 years ago
0
Samtools error
#25
abrusell
closed
6 years ago
1
Update documentation
#24
slzarate
closed
6 years ago
0
I tried with parliament2.py
#23
pinninti19
closed
5 years ago
9
Not able to pull parliament2:hgsc ?
#22
pinninti19
closed
6 years ago
9
breakseq2 -2.2- has requirement pysam==0.7.7, but you'll have pysam 0.15.1 which is incompatible
#21
mattdmem
closed
5 years ago
3
cp: cannot stat '/home/dnanexus/in/None': No such file or directory
#20
mattdmem
closed
6 years ago
2
Update project containing asset for AWS
#19
slzarate
closed
6 years ago
0
Merge v0.1.8 changes into CCDG version
#18
slzarate
closed
6 years ago
0
Add insert phred scores, filter, fix to header of combined VCF header…
#17
slzarate
closed
6 years ago
0
Update Baylor version with v0.1.8 changes
#16
slzarate
closed
6 years ago
0
Upgrading to v0.1.8
#15
slzarate
closed
6 years ago
3
Baylor feature requests
#14
slzarate
closed
6 years ago
0
Update combine for newest SURVIVOR, add qual scores
#13
AndrewCarroll
closed
6 years ago
0
Updating to v0.1.7
#12
slzarate
closed
6 years ago
0
SVTyper not producing genotyped outputs for Breakdancer and Lumpy
#11
slzarate
closed
6 years ago
1
Cnvnator svtyper fixes
#10
slzarate
closed
6 years ago
0
Annotation of SV over genes
#9
fritzsedlazeck
opened
6 years ago
4
Missing some chromosomes for some callers
#8
slzarate
opened
6 years ago
0
Use virtualenvs instead of installing svviz on the fly
#7
slzarate
closed
6 years ago
1
Bug fix, version update/add, minor code cleanup
#6
slzarate
closed
6 years ago
3
Allow no bam index
#5
slzarate
closed
6 years ago
0
Adding DNAnexus app code & documentation for running on DNAnexus
#4
slzarate
closed
6 years ago
0
what is the call from combined vcf that has no caller info
#3
arkyl
closed
6 years ago
11
Reducing number of threads svviz uses to lessen OOM errors
#2
slzarate
closed
6 years ago
0
Modified error handling if users are running the Docker image locally
#1
slzarate
closed
6 years ago
0
Previous