The genome tree toolkit is a collection of methods for working with genome trees. It is primarily intended to be used by the GTDB curation team, but has been made available in case others find it useful. It currently supports:
Taxonomy manipulation:
Measures of tree stability:
Tree manipulation:
Tree inference:
The simplest way to install this package is through pip:
sudo pip install genometreetk
If you find this package useful, please cite this git repository (https://github.com/dparks1134/GenomeTreeTk)
Copyright © 2015 Donovan Parks. See LICENSE for further details.