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dozmorovlab
/
HiCcompare
Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
https://dozmorovlab.github.io/HiCcompare/
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No MCC values in the filter_param plot
#32
ashishjain1988
opened
7 months ago
9
Advice on value for A
#31
TeiturAK
closed
11 months ago
3
Warnings from simpleLoess, effect on results?
#30
TeiturAK
closed
11 months ago
2
How to select A.min values using filter_param function?
#29
ashishjain1988
closed
1 year ago
4
cooler2sparse function code seems error
#28
junjunlab
closed
1 year ago
4
error in KRnorm
#27
jiangshan529
closed
1 year ago
3
Issue installing HiCcompare
#26
hannahdevens
closed
1 year ago
2
Comparing Allele-specific HiC matrices
#25
StephenRicher
closed
2 years ago
1
How to visualize hic.table?
#24
zhqu1148980644
closed
3 years ago
8
Why are the results from method KRnorm different from results from Juicertools
#23
junmeiW
closed
2 years ago
2
loess normalization error
#22
BenxiaHu
closed
3 years ago
9
Skip Loess normalization
#21
sarah872
closed
3 years ago
5
object 'temp' not found
#20
sarah872
closed
3 years ago
3
KRnorm
#19
BenxiaHu
closed
3 years ago
1
exclude.regions
#18
fgualdr
closed
2 years ago
3
Struggling to interpret `hic_compare()` results table..
#17
serine
closed
4 years ago
3
High FPR
#16
csijcs
closed
4 years ago
12
Different results depending on matrix input order
#15
StephenRicher
closed
4 years ago
1
cooler2bedpe index issue
#14
jemilianosf
closed
4 years ago
3
Can it work for inter-chromosome differential interaction?
#13
qianXX
closed
4 years ago
1
Use more secure HTTPS URL for Aiden Lab
#12
paulmenzel
closed
1 year ago
1
Note: wrong number of arguments to 'ceiling'
#11
paulmenzel
closed
5 years ago
7
Loess normalization of balanced data
#10
Phlya
closed
5 years ago
3
Consolidating cooler reading code
#9
Phlya
closed
5 years ago
23
Saving results
#8
Phlya
closed
6 years ago
10
Working with cooler files
#7
Phlya
closed
5 years ago
6
new interaction IFs
#6
RuiqinZheng
closed
6 years ago
1
the data is mismatch?
#5
RuiqinZheng
closed
6 years ago
6
about the 'NaN'
#4
RuiqinZheng
closed
6 years ago
1
could not find function "hic_compare"
#3
RuiqinZheng
closed
6 years ago
2
Inefficient matrix multiplication in KR norm
#2
jnasser3
closed
6 years ago
2
Manuscript
#1
jstansfield0
closed
6 years ago
0