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dozmorovlab
/
multiHiCcompare
Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
https://dozmorovlab.github.io/multiHiCcompare/
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Reference level for group difference detection
#23
JamesSpurrier
opened
2 months ago
0
Empty hicexp
#22
alkurowska
opened
4 months ago
1
normalization between matrices
#21
Nico-FR
closed
5 months ago
1
formatting hicexp_MD plots
#20
AGunnell77
opened
7 months ago
2
non-standard chromosome names
#19
pna059
opened
11 months ago
1
how to convert the normalization results for each sample back to the .hic format
#18
caragraduate
opened
12 months ago
2
How to remove mm9 blacklist regions when running multiHiCcompare?
#17
CW20221031
closed
1 year ago
1
Version Incompatibility?
#16
jlguidubaldi1
closed
1 year ago
2
Normalization of a single chromosme vs whole genome
#15
ashishjain1988
closed
1 year ago
2
How can we illustrate trans-differential interaction with multiHiCcompare?
#14
Z-H-Zhang
opened
1 year ago
3
Progressive pooling
#13
BenxiaHu
closed
1 year ago
2
Updating straw version
#12
sa501428
opened
2 years ago
1
error when running make_hicexp 'long vectors not supported yet'
#11
hrstu
closed
3 years ago
8
Custom cytoBand GenomicRanges (for mouse genome)
#10
biofilos
closed
1 year ago
7
hic_exactTest error
#9
BenxiaHu
closed
3 years ago
6
topDirs function isn't compatible with hic_glm when multiple contrasts are passed through
#8
serine
opened
4 years ago
1
Can Not make_hicexp From HiC-Pro Data
#7
jeffreygwang
closed
4 years ago
4
calling specific chromosomes
#6
feefee20
closed
4 years ago
1
hic_glm on resolutions > 1Mb
#5
hreypar
closed
4 years ago
2
Update fastlo.R
#4
menggf
closed
4 years ago
1
One versus many
#3
imerelli
closed
4 years ago
2
debugging for sparse data
#2
armenabnousi
closed
4 years ago
0
error when running hic_exactTest with sparse data
#1
armenabnousi
closed
4 years ago
2