dpasqualin sfreemap issues

dpasqualin / sfreemap

A Simulation Free approach for Stochastic Mapping

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1554-7

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issues

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Error in sfreemap()

#25 MarliesJFrancine opened 7 months ago
1
Fix calling sfreemap with ARD model

#24 dpasqualin closed 1 year ago
0
Update README.md

#23 dpasqualin closed 1 year ago
0
Model="ARD" fails.

#22 SimonGreenhill closed 1 year ago
2
Allow specifying root probabilities.

#21 SimonGreenhill opened 2 years ago
1
Fix deprecation warning

#20 SimonGreenhill closed 2 years ago
0
ape::is.binary.tree is deprecated in favor of ape::is.binary

#19 SimonGreenhill closed 2 years ago
1
fix detection of parallel mode

#18 sam217pa closed 3 years ago
3
error installing sfreemap

#17 Giu1ia closed 3 years ago
7
Vignette for sfreemap

#16 flashton2003 closed 6 years ago
2
Clarity on state of code

#15 flashton2003 closed 6 years ago
1
Rename it all

#14 dpasqualin closed 8 years ago
0
Create function to draw mutation rate

#13 dpasqualin closed 3 years ago
0
Implement substitution models as in simmap

#12 dpasqualin closed 8 years ago
1
aesthetic changes for sfreemap.plot_tree

#11 dpasqualin closed 9 years ago
0
on tree_plot start branches with probabilities near 50%

#10 dpasqualin closed 9 years ago
0
The bar plot for distribution can change alpha for non HPD bars

#9 dpasqualin opened 9 years ago
0
Plot all states in the same barplot

#8 dpasqualin closed 9 years ago
0
Rename label for axis x

#7 dpasqualin closed 9 years ago
0
map_dwelling: Place NA in the subtitle

#6 dpasqualin closed 9 years ago
0
Show interval drawing grey bars instead of the red line

#5 dpasqualin closed 9 years ago
0
map_dwelling: scale proportions relatively to branch length

#4 dpasqualin closed 9 years ago
0
Create function map_transition

#3 dpasqualin closed 9 years ago
1
Change function name from analyse to map_dwelling

#2 dpasqualin closed 9 years ago
0
Check for polytomies

#1 dpasqualin opened 9 years ago
0