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dptech-corp
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Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
https://doi.org/10.1101/2022.08.04.502811
Apache License 2.0
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parameters setting
#150
jimfeng9705
opened
2 months ago
0
Update README.md
#149
ZiyaoLi
opened
2 months ago
0
Add Uni-Fold Conformer (a diffusion-based conformation sampling method)
#148
PKUfjh
opened
4 months ago
0
Ufconf script
#147
PKUfjh
closed
4 months ago
0
Unifold on custom a3m MSA files
#146
FranceCosta
opened
4 months ago
0
Unifold-Musse training and finetuning scripts as well as the ability to use PDB templates
#145
rakeshr10
opened
6 months ago
0
Symmetry code doesn’t work
#144
rakeshr10
opened
6 months ago
4
fix #141
#143
ZiyaoLi
closed
8 months ago
0
Training with linkers
#142
Amelie-Schreiber
opened
8 months ago
0
UniFold crash: unable to find SCOPdata (a bug that has popped up in ColabFold, & there is a straightforward reason and patch)
#141
jfbazan
closed
8 months ago
2
convert_unifold_to_alphafold.py?
#140
sokrypton
opened
9 months ago
0
multi-gpu inference
#139
coefficient49
opened
9 months ago
0
model name for all alphafold parameters
#138
linghuichen
opened
10 months ago
1
Flash v2
#137
hypnopump
opened
11 months ago
0
competition multimer analysis -- does chain order matter?
#136
avilella
opened
11 months ago
7
recreating homo_search.py output -- minimal version
#135
avilella
opened
11 months ago
3
questions on installing on Ubuntu Linux 22.04
#134
avilella
closed
11 months ago
1
FileNotFoundError: No such file or directory: '/C.feature.pkl.gz'
#133
addsg
opened
11 months ago
1
bohrium apps notice
#132
ZiyaoLi
closed
9 months ago
0
Run Uni-Fold with Bohrium Apps
#131
ZiyaoLi
opened
12 months ago
0
Integrated to Bohrium Apps
#130
ZiyaoLi
closed
12 months ago
0
PoC: Better reordering
#129
hypnopump
opened
1 year ago
0
[WIP] add batch inference of unifold v2.2.1
#128
sg-chen
opened
1 year ago
0
Could not find path to the "hhblits" binary
#127
addsg
opened
1 year ago
0
Multi node training
#126
drhicks
opened
1 year ago
3
correct load v3
#125
teslacool
closed
1 year ago
0
parameters are missing in the pretrained weights
#124
dingquanyu
opened
1 year ago
4
fixed swap error
#123
dingquanyu
closed
1 year ago
0
add alphafold v3 param parse & config
#122
ZiyaoLi
closed
1 year ago
6
import_jax_weights_ failed on AlphaFold-Multimer 2.3.0
#121
dingquanyu
opened
1 year ago
3
Is total_step fixed?
#120
dingquanyu
closed
1 year ago
2
tolerate inconsistencies between pdb_assembly and multi_label
#119
ZiyaoLi
closed
1 year ago
0
Update unifold.ipynb to cu118torch2.0.0-cp310
#118
ZiyaoLi
closed
1 year ago
0
fix import libmsym
#117
ZiyaoLi
closed
1 year ago
0
colab error
#116
DrJesseHansen
closed
8 months ago
8
Missing import in Colab
#115
LionThu1
closed
1 year ago
1
pdb_assembly.json does not agree with train_multi_label.json
#114
dingquanyu
closed
1 year ago
6
Entries in eval_multi_label.json and eval_sample_weight.json do not exist in pdb_uniprots
#113
dingquanyu
closed
8 months ago
1
Can unifold multimer be trained with batch_size higher than 1?
#112
dingquanyu
closed
1 year ago
2
Why is dim hard-coded in collate_fn in UnifoldMultimerDataset
#111
dingquanyu
closed
1 year ago
0
add symmetry utils to process input structures
#110
ZiyaoLi
closed
1 year ago
0
notebook update to cu116torch1.13.1 cp39
#109
ZiyaoLi
closed
1 year ago
0
Errors in train_multi_label.json
#108
dingquanyu
closed
1 year ago
3
Colab error and how many recycles possible?
#107
avilella
closed
1 year ago
7
Merge Musse to main branch (#102)
#106
guolinke
opened
1 year ago
1
[DNM] Rewrite config
#105
ZhiyuanChen
opened
1 year ago
1
Rewrite Config
#104
ZhiyuanChen
closed
1 year ago
0
add dataset download via Volcengine
#103
guolinke
closed
1 year ago
0
Musse
#102
teslacool
closed
1 year ago
0
Uni-Fold Musse
#101
teslacool
closed
1 year ago
0
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