drisso SingleCellExperiment issues

drisso / SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

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issues

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[advice] adding new datasets to a reference dataset

#76 cstrlln opened 1 month ago
0
Mistake Locks R Terminal

#75 DarioS opened 3 months ago
1
Check for NULL metadata in .hits2mat

#74 lazappi closed 3 months ago
1
`colPairs(x, asSparse = TRUE)` fails when there are no metadata columns

#73 lazappi closed 3 months ago
5
cannot convert DelayedMatrix format for big sce object

#72 Marwansha opened 4 months ago
1
How to install the old version?

#71 mainyanghr opened 5 months ago
1
Special field for gene symbols

#70 lambdamoses closed 11 months ago
3
Error when making a class inheriting from SingleClassExperiment

#69 HarkiratSohi opened 1 year ago
8
Pass `delayed` and `fill` to `combineCols()` of altExps

#68 PeteHaitch closed 1 year ago
1
Interaction between SingleCellExperiment and tictoc packages?

#67 brgew closed 1 year ago
3
Internal error in constructor when sample/feature name is NA

#66 TuomasBorman opened 2 years ago
3
version field duplicated in int_metadata after concatenating two SCE objects

#65 lambdamoses opened 2 years ago
4
error when using assay()

#64 FionaMoon opened 2 years ago
1
Coercion from *SingleCellExperiment* to *SummarizedExperiment* loses rownames

#63 PeteHaitch opened 2 years ago
1
`combineCols()` errors when called via `do.call()` with a named list of objects to be combined

#62 PeteHaitch opened 2 years ago
5
Slow load time of package

#61 alexvpickering closed 2 years ago
2
Added prototype methods for combineCols.

#60 LTLA closed 3 years ago
0
logNormcounts() function doesn't work for my singlecellExperiment object

#59 tf1993614 opened 3 years ago
11
Modify behavior of withColData= in altExp(s)

#58 LTLA closed 3 years ago
1
Respecting any mcols() passed to reducedDims<-() if a List is supplied as the value

#57 brgew closed 3 years ago
4
Double validation of the int_elementMetadata slot

#56 hpages opened 3 years ago
6
Methods for splitting SingleCellExperiment objects

#55 jma1991 opened 3 years ago
2
SCE-internals man page

#54 FelixErnst closed 3 years ago
4
Support pairing information for rows and columns.

#53 LTLA closed 4 years ago
0
Hierarchical clustering dendrogram

#52 atflores closed 4 years ago
1
Remove non-used slots

#51 jgarces02 closed 4 years ago
2
SCE class allows assigning a SCE as assay?

#50 HelenaLC closed 4 years ago
7
int_colData method not found

#49 drighelli closed 4 years ago
2
Segregation according to gene name

#48 Hemantcnaik closed 4 years ago
2
could not find function "colLabels"

#47 suvarzz closed 4 years ago
1
Rownames stripped when using `reducedDims<-`

#46 LiNk-NY closed 4 years ago
2
Directly storing size factors in the colData

#45 LTLA closed 4 years ago
3
cbind() hangs if assays don't match

#44 nathancfox opened 4 years ago
5
Change in reducedDims slot in Bioc 10?

#43 hpliner closed 4 years ago
4
Fix typo

#42 PeteHaitch closed 4 years ago
0
Fix typo

#41 PeteHaitch closed 4 years ago
0
address issue #38

#40 kevinrue closed 4 years ago
1
could not find function "altExp<-"

#39 ghost closed 4 years ago
4
Add tests for altExp error messages

#38 LTLA closed 4 years ago
4
updateObject for classes that inherit from SingleCellExperiment has problem with reducedDims slot change

#37 epurdom closed 4 years ago
2
getters / setters for altExp

#36 kevinrue closed 4 years ago
2
Throw informative errors when accessing invalid reduced dimensions

#35 kevinrue closed 4 years ago
7
Improve `setReplaceMethod` for `sizeFactors`

#34 mjsteinbaugh closed 4 years ago
5
Refactor

#33 LTLA closed 4 years ago
0
Alternative experiment getters and setters

#32 LTLA closed 4 years ago
9
Printing is suddenly slow?

#31 LTLA closed 4 years ago
10
Secondary objects for alternative feature types

#30 LTLA closed 4 years ago
8
Joining `sce` objects (extension to `cbind`)

#29 robertamezquita closed 4 years ago
1
Is there any R package supporting DotPlot() for SingleCellExperiment object?

#28 genecell closed 5 years ago
3
Error in rowData(object)

#27 ONeillMB1 closed 5 years ago
5