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dsilvestro
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PyRate
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
GNU Affero General Public License v3.0
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Possible Discrepancy With `PyRate` Licensing
#49
AFg6K7h4fhy2
closed
1 month ago
1
[RuntimeWarning: invalid value encountered in scalar divide] error when running RJMCMC
#48
isovaline2230
opened
1 month ago
0
pin numpy to pre-2.0 version
#47
davidecarlson
closed
4 months ago
1
NameError: free variable 'L_tbl' referenced before assignment in enclosing scope
#46
JoukjeKloosterman
closed
6 months ago
5
(plotRJ) Time bins for rate shift calculations inconsistent with time bins for speciation and extinction rates
#45
mishawhittingham
closed
7 months ago
3
Compiling and Installing FastPyRateC Library Requires Depricated 'distutils' Module
#44
EMDoughty
closed
10 months ago
3
PyRate.py: error: argument -r: invalid int value: 'ecent'
#43
XuWeiEvo
opened
1 year ago
0
Error combining log files
#42
LauravanHolstein
closed
1 year ago
2
Error plotting MBD results: numpy.exceptions.AxisError: axis 1 is out of bounds for array of dimension 0
#41
LauravanHolstein
closed
1 year ago
2
"inconsistent use of tabs and spaces in indentation" in MCDD
#40
LauravanHolstein
closed
1 year ago
1
Error message when trying to download FastPyrateC using curl
#39
megaraptor1
closed
1 year ago
4
pyrate.py "'float' object cannot be interpreted as an integer"
#38
LauravanHolstein
closed
1 year ago
1
Error in compiling FastPyRateC library
#37
LauravanHolstein
closed
1 year ago
12
How to deal with multiple fossils for the same species, including when they have different MinAge and MaxAge?
#36
jamie-thompson
closed
1 year ago
1
Avoids counting a species ending with "q" as a q_rate column
#35
Buffan3369
closed
1 year ago
1
Two potential fixes in PyRateContinuous.py
#34
zhangchicool
closed
1 year ago
1
IndexError (index out of bounds)
#33
zhangchicool
closed
1 year ago
2
Module FastPyRateC is not found on mac M1
#32
Yue1108
closed
1 year ago
2
Dissolve for loop that concatanate string to Python str.join API as s…
#31
boneyag
opened
2 years ago
0
LTT plot shows a wrong number of replicates
#30
astrolitterbox
opened
2 years ago
0
bonn + rjmcmc
#29
dsilvestro
closed
2 years ago
0
Updated boost version to fix issue with Catalina
#28
meyerx
closed
3 years ago
0
Error when running PPModelTest
#27
MareikeJaniak
closed
3 years ago
2
How to do multithreading for PyRate?
#26
BiodeB
closed
3 years ago
3
changed imp module to importlib
#25
nussaibahrs
closed
3 years ago
1
plotRJ can produce rate shift frequencies > 1
#24
davidcerny
closed
4 years ago
3
add turnover rates to RJMCMC RTT plots
#23
dsilvestro
opened
4 years ago
0
diversity dependence via carrying capacity and ode solver
#22
thauffe
closed
4 years ago
0
Approximate diversity
#21
thauffe
closed
4 years ago
0
ML with several preservation strata and covariates; enable covariate …
#20
thauffe
closed
4 years ago
0
Add symCov to ML and diversity trajectory depending on hetero preservation
#19
thauffe
closed
5 years ago
1
subplex optimizer
#18
thauffe
closed
5 years ago
1
Added sampling heterogeneity to DES2 and included in tutorial
#17
thauffe
closed
5 years ago
0
import needed for des_model_lib
#16
thauffe
closed
5 years ago
0
Added sampling heterogeneity to DES
#15
thauffe
closed
5 years ago
1
IndexError when parsing predictor variables for PyRateMBD
#14
bmchorse
closed
6 years ago
2
Using -plot on PyRateMBD without having to run the MBD analysis?
#13
bmchorse
closed
6 years ago
6
Fix MBD outfile name .txt problem
#12
bmchorse
closed
6 years ago
1
Module FastPyRateC is not found on Linux (was working previously)
#11
bmchorse
closed
6 years ago
3
Fix Windows filepath plotting
#10
bmchorse
closed
6 years ago
1
Fix plot_RTT() for Windows
#9
bmchorse
closed
7 years ago
1
Plotting creates wrong filepath in R for Windows
#8
bmchorse
closed
7 years ago
1
fixed path bug in plotRTT() function input
#7
tandermann
closed
7 years ago
0
added reduceLog function (latest)
#6
tandermann
closed
8 years ago
0
added reduceLog function update
#5
tandermann
closed
8 years ago
1
added reduceLog function
#4
tandermann
closed
8 years ago
1
added Poisson-Death process
#3
dsilvestro
closed
8 years ago
0
Warning message about Python version fails in Python3
#2
carlosp420
closed
9 years ago
0
Added requirements.txt file containing Scipy and Numpy
#1
carlosp420
closed
9 years ago
1