dthonon / Client_API_VN

Export from VisioNature (Biolovision) web site to local postgresql database
GNU General Public License v3.0
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============= Client_API_VN

.. image:: https://img.shields.io/badge/code%20style-black-000000.svg :target: https://github.com/psf/black .. image:: https://img.shields.io/pypi/status/Client-API-VN :alt: PyPI - Status .. image:: https://img.shields.io/pypi/pyversions/Client-API-VN :alt: PyPI - Python Version .. image:: https://img.shields.io/pypi/l/Client-API-VN :alt: PyPI - License .. image:: https://codecov.io/gh/dthonon/Client_API_VN/branch/develop/graph/badge.svg :target: https://codecov.io/gh/dthonon/Client_API_VN

Presentation

Python applications that use Biolovision/VisioNature (VN) API to:

Applications are available either as:

They are tested under Linux Ubuntu >20 or Debian 10. Other Linux distributions could work. Windows is not tested at all and will probably not work.

See Documentation <https://client-api-vn.readthedocs.io/en/stable/>_ for more informations.

A thin Python layer on top of Biolovision API is provided, as described in API Manual <https://client-api-vn.readthedocs.io/en/stable/api/modules.html>_.

Installation - Python

These instructions present the steps required to install the Python applications.

Windows:

Install Python from Microsoft store

Add python script directory to Path, as described in
`How to add Python to Windows PATH <https://datatofish.com/add-python-to-windows-path/>`_.

Linux: add the following debian packages::

sudo apt -y install build-essential python3-dev python3-venv

Create a python virtual environment, activate it and update basic tools::

python3 -m venv env_VN
source env_VN/bin/activate
python -m pip install --upgrade pip

Install from PyPI::

pip install Client-API-VN

Installation - Docker

These instructions present the steps required to install the Docker applications::

docker pull dthonon/client-api-vn
docker run --name xfer_vn \
           --mount source=xfer_vn,target=/root \
           --workdir /root \
           --tty --interactive \
           dthonon/client-api-vn bash

This docker only contains the application and requires an external Postgresql database.

The following steps are the common to both Python and Docker installation.

Getting Started - transfer_vn

See Documentation <https://client-api-vn.readthedocs.io/en/latest/apps/transfer_vn.html>__ for more informations.

Getting Started - update_vn

See Documentation <https://client-api-vn.readthedocs.io/en/latest/apps/update_vn.html>__ for more informations.

Prerequisites

For Linux and Postgresql installation, refer to Server installation <https://client-api-vn.readthedocs.io/en/latest/apps/server_install.html>_.

Installation requires the following python module::

pip

All other python dependencies are managed by pip install.