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duncanca / mosaik-aligner

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MosaikMerge Segmentation Fault #40

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1. MosaikMerge -in 454Run1_1_aligned.dat -in 454Run1_2_aligned.dat -out
454Run1.dat

What is the expected output? What do you see instead?
Expected output is merged .dat file for the two input files.

I see 
- phase 1 of 2: serialize alignments:
 0% [                                                                     
                                                       ]                  
                    |Segmentation fault

What version of the product are you using? On what operating system?
MosaikMerge 1.0.1388 on Kubuntu 9.1 64bit

Please provide any additional information below.
I have tried merging both some 454 data and some Illumina data and in both
cases I get a segmentation fault. Changing -mem does not solve the problem.

Original issue reported on code.google.com by n.r.str...@gmail.com on 2 Mar 2010 at 3:42

GoogleCodeExporter commented 8 years ago 
I was trying to merge aligned but not sorted .dat files. When I tried on sorted
files, MosaikMerge worked. Is this the expected behaviour? From the manual it 
looks
as though aligned reads can be used as input and it doesn't make sense to me 
that the
reads would need to be pre-sorted to merge the files. Is the output of 
MosaikMerge
sorted or not?

Original comment by n.r.str...@gmail.com on 3 Mar 2010 at 8:40