MosaikBuild:
commond:./MosaikBuild -fr ../../mydata/F3_csfasta_a -
fq ../../mydata/F3_QV_qual_a -fr2 ../../mydata/R3_csfasta_a -
fq2 ../../mydata/R3_QV_qual_a -out myreads.dat -st solid
----------------------------------
I use that to build the mate-pair reads,it seems that the output is
reasonable.
but when i use the aligner, the mistake come out as follows:
Aligning read library (92413079):
0%
[ ] /-
--------------------
---------------------------------------------------------
MosaikSort 1.0.1388 2010-
02-01
Michael Stromberg Marth Lab, Boston College Biology
Department
---------------------------------------------------------------------------
---
- resolving the following types of read pairs: [unique orphans] [unique vs
unique] [unique vs multiple
]
ERROR: The alignment archive header indicates that no reads are contained
in
this file. This might happen when the file was not closed properly -
usually from a killed process or a crash. Your only recourse is to
realign this data set.
filename: [myreads_aligned_d.dat]
------------------------------------------------------------
commond:
./MosaikAligner -in myreads.dat -out myreads_aligned.dat -ia
humanChr.csfasta -ibs humanChr.dat -hs 15 -mm 4 -mhp 100 -act 20 -j
humanChr_15 -p 8
-------------------------------------
who can help me?
Original issue reported on code.google.com by passiont...@gmail.com on 9 May 2010 at 7:38
Original issue reported on code.google.com by
passiont...@gmail.comon 9 May 2010 at 7:38