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duncanca / mosaik-aligner

Automatically exported from code.google.com/p/mosaik-aligner
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-rur option corrupts the quality line #55

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. MosaikAligner with -rur option

What is the expected output? What do you see instead?
standard fastq files
Instead i see values in quality line got corrupted. I see "%" which is 
equivalent to ..... But that is no 
the original quality value for that read. 

What version of the product are you using? On what operating system?
1.0.1367
OS=> CentOS 5
Running on Rocks cluster

Please provide any additional information below.

Original issue reported on code.google.com by ragowtha...@gmail.com on 18 May 2010 at 10:05

GoogleCodeExporter commented 9 years ago

Original comment by WanPing....@gmail.com on 17 Nov 2010 at 7:37