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duncanca / mosaik-aligner

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is there any way to analyze .bam alignment file using gigaBayes? #64

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 

I want to call SNPs using gigaBayes after aligning using BWA.

Original issue reported on code.google.com by youyo...@gmail.com on 30 Jul 2010 at 12:03

GoogleCodeExporter commented 8 years ago 
Hi,

Please try our new genetic variant detector, FreeBayes, which operates on BAM 
alignment files.

http://bioinformatics.bc.edu/marthlab/FreeBayes

Original comment by WanPing....@gmail.com on 27 Oct 2010 at 4:11